View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_65 (Length: 274)
Name: NF1245_low_65
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 36 - 263
Target Start/End: Complemental strand, 1556000 - 1555773
Alignment:
| Q |
36 |
ccaacttctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagcc |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1556000 |
ccaacttctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagcc |
1555901 |
T |
|
| Q |
136 |
ttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtacagg |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1555900 |
ttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttcgccataaagttacgaccatctgatgatatctttagtacagg |
1555801 |
T |
|
| Q |
236 |
gaagatagccaatagcaagcatagtatt |
263 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
1555800 |
gaagatagccaatagcaagcatagtatt |
1555773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 36 - 263
Target Start/End: Original strand, 1460962 - 1461189
Alignment:
| Q |
36 |
ccaacttctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagcc |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460962 |
ccaacttctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagcc |
1461061 |
T |
|
| Q |
136 |
ttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtacagg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1461062 |
ttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttcgccataaagttacgaccatctgatgatatctttagtacagg |
1461161 |
T |
|
| Q |
236 |
gaagatagccaatagcaagcatagtatt |
263 |
Q |
| |
|
|||||||||||||||||| |||| |||| |
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| T |
1461162 |
gaagatagccaatagcaaacataatatt |
1461189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 36 - 263
Target Start/End: Complemental strand, 1567492 - 1567265
Alignment:
| Q |
36 |
ccaacttctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagcc |
135 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |
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| T |
1567492 |
ccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgcc |
1567393 |
T |
|
| Q |
136 |
ttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtacagg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1567392 |
ttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagg |
1567293 |
T |
|
| Q |
236 |
gaagatagccaatagcaagcatagtatt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
1567292 |
gaagatagccaatagcaagcatagtatt |
1567265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 36 - 263
Target Start/End: Original strand, 1455853 - 1456080
Alignment:
| Q |
36 |
ccaacttctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagcc |
135 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |
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|
| T |
1455853 |
ccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgcc |
1455952 |
T |
|
| Q |
136 |
ttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtacagg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
1455953 |
ttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagcatagg |
1456052 |
T |
|
| Q |
236 |
gaagatagccaatagcaagcatagtatt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
1456053 |
gaagatagccaatagcaagcatagtatt |
1456080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 1454437 - 1454509
Alignment:
| Q |
138 |
aattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgac |
210 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
1454437 |
aattgaataaataaataaagagggacgagtatgaccatgatgatattctcatgttttgccatgaagttacgac |
1454509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 2164278 - 2164326
Alignment:
| Q |
54 |
attgcatttgatagcaaaattatgaataagatcccaaagattctgttgt |
102 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||||||||| ||||||| |
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|
| T |
2164278 |
attgcagttgatagcagaattatgaataagaccccaaagatgctgttgt |
2164326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 1430084 - 1430167
Alignment:
| Q |
180 |
atattctcatattttgccataaagttacgaccatctgatgatatctttagtacagggaagatagccaatagcaagcatagtatt |
263 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| ||||| | ||||||| |||||||||| |||||| ||||||||||||| |
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| T |
1430084 |
atattctgatattttgccatgaagtttgcaccatatgatgttgtctttagggtagggaagataaccaataccaagcatagtatt |
1430167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 1754156 - 1754212
Alignment:
| Q |
38 |
aacttctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagat |
94 |
Q |
| |
|
|||||| | ||||||||||||| ||||||| || ||||||||||||||||||||| |
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|
| T |
1754156 |
aacttccatgactgaaattgcacttgatagtccaagtatgaataagatcccaaagat |
1754212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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