View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_69 (Length: 270)
Name: NF1245_low_69
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 34 - 237
Target Start/End: Original strand, 35087694 - 35087897
Alignment:
| Q |
34 |
cacagaaccaaacttcagtcaagagctaaaaagacaattttcttgggttacaaatctggttacaaaggctttgtcctttttgacattcattctagagaaa |
133 |
Q |
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| T |
35087694 |
cacagaaccaaacttcagtcaagagctaaaaagacaattttcttgggttacaagtctggttacaaaggctttgtcctttttgacattcattctagagaaa |
35087793 |
T |
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| Q |
134 |
tattcatttccagacatgtttcttttcatgaaaatgtgcttccttaccctcaaaacccatcatccactactcatgattggcaatatttcattacttcacc |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35087794 |
tattcatttccagacatgtttcttttcatgaaaatgtgcttccttaccctcaaaacccatcatccactactcatgattggcaatatttcattacttcacc |
35087893 |
T |
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| Q |
234 |
ctct |
237 |
Q |
| |
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|||| |
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| T |
35087894 |
ctct |
35087897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 22643933 - 22644009
Alignment:
| Q |
124 |
tctagagaaatattcatttccagacatgtttcttttcatgaaaatgtgcttccttaccctcaaaacccatcatccac |
200 |
Q |
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|||||||| || ||||||||||||||||| ||||||||||||| | | |||||||| | | |||| ||||| ||||| |
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| T |
22643933 |
tctagagagattttcatttccagacatgtctcttttcatgaaactattcttccttatcataaaaatccatcctccac |
22644009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 34 - 234
Target Start/End: Complemental strand, 27035958 - 27035758
Alignment:
| Q |
34 |
cacagaaccaaacttcagtcaagagctaaaaagacaattttcttgggttacaaatctggttacaaaggctttgtcctttttgacattcattctagagaaa |
133 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27035958 |
cacagaaccaaacttcagtcaagagctaaaaagacagttttctttggttacaagtttggttacaaaggctttgttctttttgacattcattctagagaaa |
27035859 |
T |
|
| Q |
134 |
tattcatttccagacatgtttcttttcatgaaaatgtgcttccttaccctcaaaacccatcatccactactcatgattggcaatatttcattacttcacc |
233 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27035858 |
tattcatttccaaacatgtttcttttcatgaaaatgtgcttccttaccctcaaaatccatcatccactactcatgattggccatatttcattacttcacc |
27035759 |
T |
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| Q |
234 |
c |
234 |
Q |
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| |
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| T |
27035758 |
c |
27035758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 34890620 - 34890516
Alignment:
| Q |
79 |
ggttacaaatctggttacaaaggctttgtcctttttgacattcattctagagaaatattcatttccagacatgtttcttttcatgaaaatgtgcttcctt |
178 |
Q |
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||||| |||| |||||||||||| ||| ||||| ||||| ||||||||||| || ||||| || ||||||||| |||||||||||| | ||||||| |
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| T |
34890620 |
ggttataaatttggttacaaaggttttactcttttagacatgcattctagagacatcttcatctctagacatgttatttttcatgaaaacattcttcctt |
34890521 |
T |
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| Q |
179 |
accct |
183 |
Q |
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||||| |
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| T |
34890520 |
accct |
34890516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 44230017 - 44230111
Alignment:
| Q |
71 |
ttttcttgggttacaaatctggttacaaaggctttgtcctttttgacattcattctagagaaatattcatttccagacatgtttcttttcatgaa |
165 |
Q |
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||||||| || ||||| || ||||||||||| || | || ||||||||||||| ||||||||||| |||| ||||||||| |||||||||| |
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| T |
44230017 |
ttttcttaggctacaagtcaggttacaaaggtttcattctacttgacattcattccagagaaatatttgtttctagacatgttgtttttcatgaa |
44230111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 12301335 - 12301397
Alignment:
| Q |
90 |
tggttacaaaggctttgtcctttttgacattcattctagagaaatattcatttccagacatgt |
152 |
Q |
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||||| |||||| ||||||||||| || |||||||||||||||||| ||| || |||||||| |
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| T |
12301335 |
tggtttcaaaggttttgtccttttagatattcattctagagaaatacacatatctagacatgt |
12301397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 32612161 - 32612108
Alignment:
| Q |
127 |
agagaaatattcatttccagacatgtttcttttcatgaaaatgtgcttccttac |
180 |
Q |
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||||||||||| |||||||||||||| |||| ||||||||| | ||||||||| |
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| T |
32612161 |
agagaaatatttgtttccagacatgttactttccatgaaaatatccttccttac |
32612108 |
T |
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