View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_71 (Length: 266)
Name: NF1245_low_71
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 8755036 - 8755260
Alignment:
| Q |
30 |
tgtatgacggtaatcttacccagaatgttaagcaatttttctcccactgtctaagttgcaggatatttgaatctctgttcttgtgttggtg---aataat |
126 |
Q |
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| T |
8755036 |
tgtatgacggtaatcttacccagaatgttaagcaatttttctcccactgtctaagttgcaggatatttgaatctctgttcttgtattggtggtgaataat |
8755135 |
T |
|
| Q |
127 |
agtgaggggatgaatagttcagaaacaatttggttttcaaacaccactcgttgggtttgaaaatcagtttatgatgcaccgaaccataaaatcagttcag |
226 |
Q |
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| T |
8755136 |
agtgaggg-atgaatagttcagaaacaatttggttttcaaacatcactcgttcagttcgaaaatctgtttatgatgcaccgaaccataaaatcagttcag |
8755234 |
T |
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| Q |
227 |
ttcaactccagtgaaattgtgaacgg |
252 |
Q |
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||||||||| |||||||||||||||| |
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| T |
8755235 |
ttcaactccggtgaaattgtgaacgg |
8755260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 134 - 263
Target Start/End: Complemental strand, 10509888 - 10509759
Alignment:
| Q |
134 |
ggatgaatagttcagaaacaatttggttttcaaacaccactcgttgggtttgaaaatcagtttatgatgcaccgaaccataaaatcagttcagttcaact |
233 |
Q |
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| T |
10509888 |
ggatgaatagttcagaaacaatttggtttccaaacatcactcgttctgttcaaaaatcagtttatggtgcaccgaaccataagatcagttcagttcaact |
10509789 |
T |
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| Q |
234 |
ccagtgaaattgtgaacggttcggttcagt |
263 |
Q |
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| T |
10509788 |
ctggtgaaattgtgaacggttcggttcagt |
10509759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 9795993 - 9796123
Alignment:
| Q |
133 |
gggatgaatagttcagaaacaatttggttttcaaacaccactcgttgggtttgaaaatcagtttatgatgcaccgaaccataaaatcagttcagttcaac |
232 |
Q |
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|||||||||||||||| ||||||||||||| |||||| |||| ||| |||| |||| ||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
9795993 |
gggatgaatagttcaggaacaatttggtttccaaacatcactggtttggttcaaaaaccagtttatggtgcaccaaaccataaaatcagttcagttcaac |
9796092 |
T |
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| Q |
233 |
tccagtgaaattgtgaacggttcggttcagt |
263 |
Q |
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|| ||||||||||||||||||||||||||| |
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| T |
9796093 |
tcgggtgaaattgtgaacggttcggttcagt |
9796123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 45184491 - 45184361
Alignment:
| Q |
133 |
gggatgaatagttcagaaacaatttggttttcaaacaccactcgttgggtttgaaaatcagtttatgatgcaccgaaccataaaatcagttcagttcaac |
232 |
Q |
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|||||||||||||||| ||||||||||||| |||||| |||| ||| |||| |||| ||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
45184491 |
gggatgaatagttcaggaacaatttggtttccaaacatcactggtttggttcaaaaaccagtttatggtgcaccaaaccataaaatcagttcagttcaac |
45184392 |
T |
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| Q |
233 |
tccagtgaaattgtgaacggttcggttcagt |
263 |
Q |
| |
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|| ||||||||||||||||||||||||||| |
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|
| T |
45184391 |
tctggtgaaattgtgaacggttcggttcagt |
45184361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 263
Target Start/End: Complemental strand, 53255876 - 53255748
Alignment:
| Q |
135 |
gatgaatagttcagaaacaatttggttttcaaacaccactcgttgggtttgaaaatcagtttatgatgcaccgaaccataaaatcagttcagttcaactc |
234 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||| |||| ||||| | ||||||| | |||||||| |||||||||||| ||||||||| |
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| T |
53255876 |
gatgaatagttcagaaacaatttggtttctaaacattcaaggtttggttcgaaaacctgtttatggtacaccgaactataaaatcagtttagttcaacta |
53255777 |
T |
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| Q |
235 |
cagtgaaattgtgaacggttcggttcagt |
263 |
Q |
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| | |||||||||||||||| ||||||| |
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| T |
53255776 |
cgataaaattgtgaacggttcagttcagt |
53255748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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