View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_72 (Length: 266)
Name: NF1245_low_72
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2015610 - 2015846
Alignment:
| Q |
1 |
aaaattgttctttcagtttaatgagctttcttttctttaatgccaaatacgcataaaagcttccaaccagtagtgctacaaggctcatgctgacacctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2015610 |
aaaattgttctttcagtttaatgagctttcttttctttaatgccaaatacgcataaaagcttccaaccagtagtgctacaaggctcatgctgacacctga |
2015709 |
T |
|
| Q |
101 |
acataaatggaaacatgataattttctttctgctcttcctagcttgttgatgtttcaagtcaatttatgttaacgatattagtcaaaatctcaaaatacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
2015710 |
acataaatggaaacatgataattttctttctgctcttcctagcttgttgatgtttcaagtcaatttatgttaacgacattagtcaaaatctctaaatacc |
2015809 |
T |
|
| Q |
201 |
acttttttggtcttgaaggaatgccttgggtaaatga |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
2015810 |
acttttttggtcttgaaggaatgccttgggtaaatga |
2015846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 40568126 - 40567961
Alignment:
| Q |
1 |
aaaattgttctttcagtttaatgagctttcttttctttaatgccaaatacgcataaaagcttccaaccagtagtgctacaaggctcatgctgacacctga |
100 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||| |||||| |||||||||||||||| || ||||||||| || ||||| | ||||||||||| |
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| T |
40568126 |
aaaattgttctttaagtcgaatgagctttcttttcttcaatgcccaatacgcataaaagctacccaccagtagtaatatgaggcttacgctgacacctgg |
40568027 |
T |
|
| Q |
101 |
acataaa----tggaaacatgataattttctttctgctcttcctagcttgttgatgtttcaagtca |
162 |
Q |
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||||||| ||||||| | | |||| ||||||||| ||| ||||||||||||||||||||||| |
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| T |
40568026 |
acataaacaaatggaaacttattcatttcctttctgcttttcgtagcttgttgatgtttcaagtca |
40567961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 40579184 - 40579078
Alignment:
| Q |
1 |
aaaattgttctttcagtttaatgagctttcttttctttaatgccaaatacgcataaaagcttccaaccagtagtgctacaaggctcatgctgacacctga |
100 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||| ||| |||||||| ||||| | ||||||||||| |
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| T |
40579184 |
aaaaatgttctttaagtttaatgaactttcttttcttgaatgccaaatatgcataaaagcttccaatcagcagtgctacgaggcttacactgacacctga |
40579085 |
T |
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| Q |
101 |
acataaa |
107 |
Q |
| |
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||||||| |
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| T |
40579084 |
acataaa |
40579078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 40572727 - 40572643
Alignment:
| Q |
1 |
aaaattgttctttcagtttaatgagctttcttttctttaatgccaaatacgcataaaagcttccaaccagtagtgctacaaggct |
85 |
Q |
| |
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|||| ||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||| ||| |||||||| ||||| |
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| T |
40572727 |
aaaaatgttcttgaagtttaatgaactttcttttcttgaatgccaaatatgcataaaagcttccaatcagcagtgctacgaggct |
40572643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 40591032 - 40590949
Alignment:
| Q |
1 |
aaaattgttctttcagtttaatgagctttcttttctttaatgccaaatacgcataaaagcttccaaccagtagtgctacaaggc |
84 |
Q |
| |
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||||||||||||| |||||| |||||||||| || ||||||||||| |||||| ||||||||||||||||||||| |||| |
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| T |
40591032 |
aaaattgttctttaagtttatcaagctttctttgtttcaatgccaaataagcataattgcttccaaccagtagtgctacgaggc |
40590949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 40597507 - 40597408
Alignment:
| Q |
8 |
ttctttcagtttaatgagctttcttttctttaatgccaaatacgcataaaagcttccaaccagtagtgctacaaggctcatgctgacacctgaacataaa |
107 |
Q |
| |
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|||||| |||||||||| |||| ||||||| || ||| |||| |||||||||||||| ||||||||| |||| ||||| | || ||||||| ||||||| |
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| T |
40597507 |
ttctttaagtttaatgatctttattttcttcaaagcccaataagcataaaagcttcccaccagtagtcctacgaggcttacactaacacctggacataaa |
40597408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 40601682 - 40601576
Alignment:
| Q |
1 |
aaaattgttctttcagtttaatgagctttcttttctttaatgccaaatacgcataaaagcttccaaccagtagtgctacaaggctcatgctgacacctga |
100 |
Q |
| |
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|||| |||||||| ||||||| || |||||||||| ||||| ||||| ||||| | |||||| |||||||||||||| |||| | || |||||||| |
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| T |
40601682 |
aaaaatgttctttaagtttaacaagacttcttttcttcaatgctaaatatgcatacatgcttcctaccagtagtgctacgaggcctacgcagacacctgt |
40601583 |
T |
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| Q |
101 |
acataaa |
107 |
Q |
| |
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||||||| |
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| T |
40601582 |
acataaa |
40601576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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