View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_77 (Length: 262)
Name: NF1245_low_77
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_77 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 32765228 - 32764996
Alignment:
| Q |
1 |
acttctttatcatgaaagatatcacctctactttggtaatggagtccttgtatagtggattgaaggctctcgaaggccagactagnnnnnnngaatggaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |
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| T |
32765228 |
acttctttatcatgaaagatatcacctctactttggtaatggagtccttgtatagtggattgaaggctctcgagggtcagactagcaaaaaagaatggaa |
32765129 |
T |
|
| Q |
101 |
aaaattgttggattctgaagaaataccaacacctattgttcatgttgagaatgacatgtttgtactggtggatgatgttttactgcttcttgaaagggct |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32765128 |
aaaattgttggattctgaaaaaataccaacacctattgttcgcgttgagaatgacatgtttgtactggtggatgatgttttactgcttcttgaaagggct |
32765029 |
T |
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| Q |
201 |
gctacagaaccgctccctccaaaagatgaaaag |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32765028 |
gctacagaaccgctccctccaaaagatgaaaag |
32764996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 32754530 - 32754298
Alignment:
| Q |
1 |
acttctttatcatgaaagatatcacctctactttggtaatggagtccttgtatagtggattgaaggctctcgaaggccagactagnnnnnnngaatggaa |
100 |
Q |
| |
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|||||||||| |||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||| | ||| |
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| T |
32754530 |
acttctttattgagaaagaagtcacttctactttggttatggattccttgtatagtggattgaaggctcttgagggccagactagcaagaaaggttgggt |
32754431 |
T |
|
| Q |
101 |
aaaattgttggattctgaagaaataccaacacctattgttcatgttgagaatgacatgtttgtactggtggatgatgttttactgcttcttgaaagggct |
200 |
Q |
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||||||||||||||||||||||| |||| |||||||||||| ||||||||| || ||||||||||||||||| ||| |||||| ||||||||||||||| |
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| T |
32754430 |
aaaattgttggattctgaagaaacaccagcacctattgttcgtgttgagaaggatatgtttgtactggtggacgatattttaccacttcttgaaagggct |
32754331 |
T |
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| Q |
201 |
gctacagaaccgctccctccaaaagatgaaaag |
233 |
Q |
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|||| |||||| || |||||||||||||||||| |
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| T |
32754330 |
gctatagaaccacttcctccaaaagatgaaaag |
32754298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 16776309 - 16776517
Alignment:
| Q |
24 |
acctctactttggtaatggagtccttgtatagtggattgaaggctctcgaaggccagactagnnnnnnngaatggaa----aaaattgttggattctgaa |
119 |
Q |
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|||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| | ||| || | |||||||||||| ||||| |
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| T |
16776309 |
acctctactttggtgatggactccttatatagtggattgaaggctcttgaaggccagacca-agtccaagaaaggtagggtaaaattgttggacgctgaa |
16776407 |
T |
|
| Q |
120 |
gaaataccaacacctattgttcatgttgagaatgacatgtttgtactggtggatgatgttttactgcttcttgaaagggctgctacagaaccgctccctc |
219 |
Q |
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| T |
16776408 |
gaaatgccagctccaattgtccgtgctgagaaagatatgtttgtactggtggatgatgttctattgttacttgagagggctgctatagaacctctccctc |
16776507 |
T |
|
| Q |
220 |
caaaagatga |
229 |
Q |
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| |||||||| |
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| T |
16776508 |
ctaaagatga |
16776517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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