View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_low_8 (Length: 553)

Name: NF1245_low_8
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_low_8
NF1245_low_8
[»] chr4 (44 HSPs)
chr4 (348-548)||(51922791-51922995)
chr4 (360-536)||(13183093-13183272)
chr4 (425-548)||(26651879-26652005)
chr4 (410-548)||(16566219-16566360)
chr4 (401-548)||(42944929-42945079)
chr4 (423-548)||(48550458-48550586)
chr4 (394-548)||(43772154-43772311)
chr4 (403-536)||(19592274-19592410)
chr4 (400-548)||(39636689-39636840)
chr4 (395-538)||(4954092-4954238)
chr4 (355-426)||(26652035-26652107)
chr4 (434-548)||(29149338-29149455)
chr4 (394-548)||(49519628-49519785)
chr4 (426-548)||(54152975-54153099)
chr4 (400-535)||(56241879-56242017)
chr4 (426-536)||(43781562-43781674)
chr4 (414-548)||(46830100-46830237)
chr4 (396-538)||(49136422-49136567)
chr4 (405-536)||(30842041-30842174)
chr4 (405-536)||(48407741-48407874)
chr4 (423-548)||(14072430-14072557)
chr4 (402-482)||(55638887-55638967)
chr4 (410-548)||(6138651-6138791)
chr4 (410-535)||(14564190-14564318)
chr4 (479-541)||(39187720-39187782)
chr4 (400-538)||(15603264-15603405)
chr4 (426-548)||(32238090-32238214)
chr4 (421-526)||(26426167-26426275)
chr4 (423-503)||(9893638-9893721)
chr4 (410-548)||(15619531-15619669)
chr4 (423-482)||(9889434-9889493)
chr4 (423-533)||(30887199-30887312)
chr4 (46-93)||(51922486-51922532)
chr4 (441-538)||(25312660-25312760)
chr4 (441-482)||(20191785-20191826)
chr4 (441-548)||(13167470-13167580)
chr4 (414-482)||(28986939-28987007)
chr4 (513-548)||(54488625-54488660)
chr4 (405-538)||(2175188-2175324)
chr4 (514-548)||(33574199-33574233)
chr4 (441-482)||(39733392-39733433)
chr4 (434-475)||(47384943-47384984)
chr4 (355-391)||(30841973-30842009)
chr4 (434-505)||(31520444-31520518)
[»] chr3 (39 HSPs)
chr3 (348-541)||(10334005-10334201)
chr3 (403-538)||(16246135-16246273)
chr3 (394-538)||(23207109-23207254)
chr3 (394-548)||(31084121-31084277)
chr3 (423-538)||(38172348-38172466)
chr3 (394-548)||(20813059-20813216)
chr3 (405-536)||(38125485-38125618)
chr3 (395-538)||(52966850-52966996)
chr3 (423-538)||(53179791-53179908)
chr3 (410-548)||(23496253-23496387)
chr3 (424-536)||(31618930-31619045)
chr3 (424-548)||(35425277-35425403)
chr3 (405-536)||(42318254-42318387)
chr3 (414-548)||(3348176-3348313)
chr3 (434-548)||(26519617-26519734)
chr3 (423-548)||(30811563-30811690)
chr3 (400-548)||(38340725-38340875)
chr3 (46-94)||(10333698-10333746)
chr3 (400-535)||(35930657-35930795)
chr3 (393-537)||(15511418-15511564)
chr3 (396-535)||(44224677-44224819)
chr3 (426-548)||(44939447-44939570)
chr3 (426-548)||(48189473-48189597)
chr3 (425-533)||(10853313-10853424)
chr3 (400-536)||(53074822-53074960)
chr3 (423-548)||(50664701-50664828)
chr3 (426-548)||(8424761-8424885)
chr3 (441-538)||(42475669-42475769)
chr3 (393-548)||(25847945-25848102)
chr3 (449-548)||(30809976-30810078)
chr3 (434-538)||(21224943-21225050)
chr3 (414-538)||(32357444-32357571)
chr3 (441-482)||(37698489-37698530)
chr3 (410-482)||(22736910-22736982)
chr3 (441-482)||(28884254-28884295)
chr3 (441-482)||(40244074-40244115)
chr3 (403-471)||(14959641-14959709)
chr3 (355-391)||(38125650-38125686)
chr3 (355-391)||(42318186-42318222)
[»] chr8 (29 HSPs)
chr8 (394-536)||(28425515-28425660)
chr8 (410-548)||(43550828-43550969)
chr8 (414-548)||(22936824-22936961)
chr8 (412-548)||(40742063-40742202)
chr8 (447-548)||(41289089-41289193)
chr8 (434-534)||(33627079-33627182)
chr8 (402-548)||(3467462-3467611)
chr8 (410-536)||(44926778-44926906)
chr8 (394-482)||(26243012-26243100)
chr8 (410-547)||(440221-440361)
chr8 (396-538)||(6399149-6399294)
chr8 (416-538)||(8124914-8125038)
chr8 (402-535)||(40742339-40742473)
chr8 (402-506)||(41981086-41981193)
chr8 (413-548)||(25697991-25698128)
chr8 (441-482)||(3619168-3619209)
chr8 (452-535)||(3097250-3097336)
chr8 (405-532)||(26125504-26125634)
chr8 (441-485)||(37458400-37458444)
chr8 (433-535)||(29023199-29023304)
chr8 (441-548)||(36121576-36121674)
chr8 (439-536)||(42148971-42149071)
chr8 (441-482)||(24297691-24297732)
chr8 (417-482)||(30081750-30081815)
chr8 (452-505)||(27649725-27649781)
chr8 (414-538)||(38152215-38152342)
chr8 (424-536)||(4941824-4941939)
chr8 (460-536)||(42143407-42143486)
chr8 (512-548)||(15206738-15206774)
[»] chr5 (24 HSPs)
chr5 (410-548)||(22482132-22482273)
chr5 (403-536)||(41834828-41834964)
chr5 (393-538)||(28869541-28869688)
chr5 (434-548)||(3667821-3667938)
chr5 (410-536)||(32454480-32454608)
chr5 (394-482)||(32030643-32030731)
chr5 (434-548)||(35760156-35760273)
chr5 (423-538)||(40495396-40495513)
chr5 (439-541)||(4292121-4292226)
chr5 (412-538)||(9275522-9275651)
chr5 (423-548)||(40885166-40885295)
chr5 (423-548)||(33953930-33954057)
chr5 (403-535)||(10058010-10058145)
chr5 (433-535)||(41740634-41740739)
chr5 (426-548)||(2430325-2430449)
chr5 (421-535)||(40791111-40791227)
chr5 (421-535)||(42146262-42146378)
chr5 (425-535)||(3060265-3060376)
chr5 (449-536)||(7385972-7386062)
chr5 (423-538)||(16158503-16158621)
chr5 (452-548)||(13253111-13253209)
chr5 (479-536)||(39988007-39988064)
chr5 (423-482)||(7714896-7714955)
chr5 (349-391)||(2430496-2430538)
[»] chr7 (29 HSPs)
chr7 (410-541)||(37639380-37639514)
chr7 (410-548)||(38230018-38230159)
chr7 (394-536)||(39391167-39391312)
chr7 (395-548)||(3622478-3622634)
chr7 (423-548)||(44967417-44967545)
chr7 (401-548)||(48459651-48459801)
chr7 (410-548)||(3750637-3750777)
chr7 (423-548)||(3342753-3342881)
chr7 (401-526)||(9456046-9456174)
chr7 (410-548)||(37562520-37562661)
chr7 (403-541)||(47021862-47022003)
chr7 (394-541)||(42740326-42740476)
chr7 (404-538)||(12632111-12632248)
chr7 (355-482)||(47301644-47301779)
chr7 (410-548)||(10371976-10372116)
chr7 (405-535)||(43737970-43738103)
chr7 (423-541)||(386506-386627)
chr7 (400-537)||(3375430-3375570)
chr7 (393-537)||(34366011-34366157)
chr7 (402-538)||(32205868-32206006)
chr7 (421-535)||(43631727-43631843)
chr7 (434-482)||(37886857-37886905)
chr7 (452-526)||(34010332-34010409)
chr7 (424-548)||(46541564-46541691)
chr7 (439-482)||(48134559-48134602)
chr7 (479-533)||(36920211-36920265)
chr7 (405-538)||(47217569-47217705)
chr7 (434-538)||(42904527-42904634)
chr7 (423-482)||(12961736-12961793)
[»] chr6 (13 HSPs)
chr6 (410-548)||(16548068-16548209)
chr6 (426-548)||(6208094-6208218)
chr6 (402-548)||(10826012-10826161)
chr6 (410-548)||(16442381-16442522)
chr6 (434-538)||(29409292-29409399)
chr6 (400-535)||(33899049-33899187)
chr6 (410-536)||(13739135-13739263)
chr6 (426-536)||(13744651-13744763)
chr6 (411-482)||(21455812-21455883)
chr6 (459-534)||(699536-699613)
chr6 (410-548)||(17830029-17830169)
chr6 (411-526)||(7215505-7215622)
chr6 (441-482)||(27825574-27825615)
[»] chr1 (31 HSPs)
chr1 (410-548)||(35569234-35569375)
chr1 (410-548)||(20800309-20800450)
chr1 (394-548)||(48510845-48511002)
chr1 (394-548)||(5410577-5410733)
chr1 (394-536)||(40229514-40229659)
chr1 (423-548)||(31223340-31223468)
chr1 (414-548)||(1199784-1199921)
chr1 (426-548)||(45710018-45710142)
chr1 (401-538)||(4369844-4369984)
chr1 (423-538)||(12468179-12468296)
chr1 (393-548)||(13055934-13056091)
chr1 (426-548)||(6464577-6464701)
chr1 (414-548)||(42850251-42850388)
chr1 (401-538)||(7826396-7826536)
chr1 (391-538)||(11051353-11051502)
chr1 (423-548)||(25229973-25230100)
chr1 (413-548)||(43728910-43729047)
chr1 (405-479)||(36205139-36205213)
chr1 (426-548)||(10470559-10470683)
chr1 (393-482)||(50977440-50977529)
chr1 (414-536)||(11023374-11023498)
chr1 (416-535)||(6166069-6166190)
chr1 (461-548)||(11561826-11561916)
chr1 (412-505)||(35536027-35536123)
chr1 (437-482)||(13931603-13931648)
chr1 (441-482)||(46581285-46581326)
chr1 (434-538)||(47123363-47123470)
chr1 (449-485)||(25061218-25061254)
chr1 (423-546)||(40821791-40821916)
chr1 (441-485)||(41571163-41571207)
chr1 (349-389)||(50977551-50977591)
[»] chr2 (27 HSPs)
chr2 (410-548)||(5916271-5916411)
chr2 (410-548)||(36312215-36312355)
chr2 (395-538)||(26207968-26208114)
chr2 (433-548)||(28127316-28127434)
chr2 (434-548)||(2213468-2213585)
chr2 (410-538)||(7472713-7472843)
chr2 (424-548)||(9988530-9988657)
chr2 (453-548)||(1945068-1945166)
chr2 (426-548)||(14821117-14821241)
chr2 (424-548)||(28261246-28261373)
chr2 (400-482)||(28641570-28641652)
chr2 (444-506)||(2234899-2234963)
chr2 (479-548)||(31224690-31224759)
chr2 (426-548)||(8170267-8170391)
chr2 (412-538)||(25940280-25940409)
chr2 (401-538)||(42516015-42516154)
chr2 (393-482)||(39106766-39106855)
chr2 (395-538)||(36548123-36548268)
chr2 (414-536)||(32501928-32502052)
chr2 (433-534)||(44619104-44619208)
chr2 (400-465)||(2212749-2212814)
chr2 (433-482)||(23358219-23358268)
chr2 (433-536)||(2215215-2215319)
chr2 (512-541)||(11240714-11240743)
chr2 (452-548)||(39141499-39141597)
chr2 (434-482)||(3853862-3853910)
chr2 (512-548)||(34433335-34433371)
[»] scaffold0369 (1 HSPs)
scaffold0369 (423-538)||(8391-8509)
[»] scaffold0007 (1 HSPs)
scaffold0007 (426-548)||(29154-29278)
[»] scaffold0005 (1 HSPs)
scaffold0005 (410-535)||(253057-253185)
[»] scaffold0381 (1 HSPs)
scaffold0381 (423-482)||(9053-9112)
[»] scaffold0394 (1 HSPs)
scaffold0394 (410-471)||(5942-6002)
[»] scaffold0184 (1 HSPs)
scaffold0184 (441-482)||(9258-9299)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 348 - 548
Target Start/End: Original strand, 51922791 - 51922995
Alignment:
Q  348 gaattggtgaaccaatacaaatccatttatgattttggataagtcaagaataagatatttacttttaaatacaact-aaaaggatagtttgatcattata 446  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  51922791 gaatttgtgaaccaatacaaatccatttatgattttggataagtcaagaataagatatttacttttaaatacaactaaaaaggatagtttggtcattata 51922890  T
Q  447 catttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatc 543  Q
    |||| ||||| |||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||| |    
T  51922891 cattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaattacttttagtaaagtgtatccaaacataaatcaattcagattcaac 51922990  T
Q  544 tcact 548  Q
    |||||    
T  51922991 tcact 51922995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 360 - 536
Target Start/End: Complemental strand, 13183272 - 13183093
Alignment:
Q  360 caatacaaatccatttatgattttggataagtcaagaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaa 459  Q
    ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||| ||||| |||||| ||||| ||    
T  13183272 caataaaaattcatttatgattttggataagttaagaataagatatttacttttaaatacaatttaaaggatagtttggtcattttacattcaaaatcaa 13183173  T
Q  460 ttttgattcaaactatcc---aaacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcac 536  Q
    |||||||| ||| |||||   ||||||||||| | || ||| | |||||   |||||||| |||||||||||||||||||    
T  13183172 ttttgatttaaattatccaaaaaacatcaacttataaaaatcatttttaaataagtgtatccaaacataaatcaattcac 13183093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 425 - 548
Target Start/End: Complemental strand, 26652005 - 26651879
Alignment:
Q  425 aaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaa---catcaactcaaaagaattacttttagtaaagtgtattcaaa 521  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||   |||| ||||| |||||||||||||||||||||||||  |||    
T  26652005 aaaggatagtttggtcattatacattcaaaatcaattttgattcaaactatccaaataacatcgactcataagaattacttttagtaaagtgtatctaaa 26651906  T
Q  522 cataaatcaattcacattcatctcact 548  Q
    |||||||||||||||||||| ||||||    
T  26651905 cataaatcaattcacattcaactcact 26651879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 410 - 548
Target Start/End: Original strand, 16566219 - 16566360
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| ||||||||||||||  |||||| ||||| ||||| |||||||||||||||||||||   ||||||||| || | |||| |||||||     
T  16566219 ttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaa 16566318  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  16566319 taaagtgtatccaaacataaatcaattcacattcaactcact 16566360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 401 - 548
Target Start/End: Complemental strand, 42945079 - 42944929
Alignment:
Q  401 gatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaat 497  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||   ||||||||| || ||||||    
T  42945079 gatatttacttttaaatataattaaaaggatagtttggtcattatacatttaaaatcaattttgatacatactatccaaacaacatcaacacataagaat 42944980  T
Q  498 tacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
     |||||||   |||| |||  ||||||||||||||||||||||| ||||||    
T  42944979 cacttttaagtaagtatatctaaacataaatcaattcacattcaactcact 42944929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 423 - 548
Target Start/End: Complemental strand, 48550586 - 48550458
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||   |||||||||||| |||||| |||| || |||||| ||| ||    
T  48550586 taaaatgatagtttgatcattacacatttaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtttatcca 48550487  T
Q  520 aacataaatcaattcacattcatctcact 548  Q
    ||||||||||||||||||| || ||||||    
T  48550486 aacataaatcaattcacatccaactcact 48550458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 394 - 548
Target Start/End: Complemental strand, 43772311 - 43772154
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactca 490  Q
    ||||| ||||||||||||||||||| || ||||||||||||||| |||||| ||| ||||||| |||||||||||| | ||||||   |||||||||||     
T  43772311 agaatgagatatttacttttaaatataattaaaaggatagtttggtcattacacacttaaaatcaattttgattcatattatccaaacaacatcaactcg 43772212  T
Q  491 aaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
     |||||| |||| ||  ||||||||| |||||||||||| |||||||| || ||||||    
T  43772211 taagaatcacttctaaaaaagtgtatccaaacataaatcgattcacatccaactcact 43772154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 403 - 536
Target Start/End: Complemental strand, 19592410 - 19592274
Alignment:
Q  403 tatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaatta 499  Q
    ||||||||| ||||||||| |||||| ||| |||| ||||| |||||| ||||| |||||| ||||||||||||||||||   |||| ||  |||||| |    
T  19592410 tatttacttctaaatacaattaaaagaataatttggtcattgtacattcaaaatcaattttcattcaaactatccaaacaacgtcaattcgtaagaatca 19592311  T
Q  500 cttttagtaaagtgtattcaaacataaatcaattcac 536  Q
    ||||||||||||||||| |||||||||||||||||||    
T  19592310 cttttagtaaagtgtatccaaacataaatcaattcac 19592274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 548
Target Start/End: Original strand, 39636689 - 39636840
Alignment:
Q  400 agatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaa 496  Q
    |||||||||||| |||||| || |||||||||| |||| || ||| ||||||||||| |||||||||||| ||||||||   |||||||||||  |||||    
T  39636689 agatatttacttgtaaatataattaaaaggatattttggtcgttacacatttaaaatcaattttgattcatactatccaaacaacatcaactcgtaagaa 39636788  T
Q  497 ttacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    | |||||||   |||||||| ||||||||||||||||||||| || ||||||    
T  39636789 tcacttttaagtaagtgtatccaaacataaatcaattcacatccaactcact 39636840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 395 - 538
Target Start/End: Complemental strand, 4954238 - 4954092
Alignment:
Q  395 gaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaa 491  Q
    |||| |||||| || |||||||||||| |||||||||| || | |||||| ||||||||||||||||||||||||| |||||||   ||||||||||||     
T  4954238 gaatgagatatataattttaaatacaattaaaaggataattaggtcattacacatttaaaattaattttgattcaacctatccaaacaacatcaactcat 4954139  T
Q  492 aagaattacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    |||||| |||||||    || |||  |||||||||||||||||||||    
T  4954138 aagaatcacttttaagtgagggtacccaaacataaatcaattcacat 4954092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 355 - 426
Target Start/End: Complemental strand, 26652107 - 26652035
Alignment:
Q  355 tgaaccaatacaaatccatttatgattttggataagtcaagaataagata-tttacttttaaatacaactaaa 426  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  26652107 tgaaccgatacaaatccatttatgattttggataagtcaagaataagatactttacttttaaatacaattaaa 26652035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 434 - 548
Target Start/End: Complemental strand, 29149455 - 29149338
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtattcaaacataaatca 530  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||   ||||||| | || ||| ||||||| |  ||||||| |||||||||||||    
T  29149455 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 29149356  T
Q  531 attcacattcatctcact 548  Q
    ||||||||||| ||||||    
T  29149355 attcacattcaactcact 29149338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 394 - 548
Target Start/End: Original strand, 49519628 - 49519785
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactca 490  Q
    ||||| ||||||||||||||||||| || ||||| ||||||||| |||||| ||| ||||||| |||||| || || |||||||||||   ||||| |||    
T  49519628 agaatgagatatttacttttaaatataattaaaatgatagtttggtcattacacacttaaaatcaattttaatacatactatccaaacaatatcaattca 49519727  T
Q  491 aaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
     |||||| | |||||   |||||||| ||||||||||| ||||||||| || ||||||    
T  49519728 taagaatcatttttaagcaagtgtatccaaacataaataaattcacatccaactcact 49519785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 426 - 548
Target Start/End: Original strand, 54152975 - 54153099
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||| ||||| ||||| |||||||||||||||||| ||||||   ||||||||  ||||| |||| |||||||||||||||||||    
T  54152975 aaggataatttagtcattagacattcaaaatcaattttgattcaaactattcaaacaacatcaactcatgagaatcacttctagtaaagtgtattcaaac 54153074  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || |||||||||||||||| ||||||    
T  54153075 at-aatcaattcacattcaactcact 54153099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 400 - 535
Target Start/End: Complemental strand, 56242017 - 56241879
Alignment:
Q  400 agatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaa 496  Q
    ||||||||| |||||||||||| |||||||||| |||| |||||||||||| ||||| |||||||||| |||  ||| ||||   ||||||||| |||||    
T  56242017 agatatttaattttaaatacaattaaaaggatattttggtcattatacattcaaaatcaattttgatttaaatcatctaaacattatcaactcataagaa 56241918  T
Q  497 ttacttttagtaaagtgtattcaaacataaatcaattca 535  Q
    | |||||||    | ||||| ||||||||||||||||||    
T  56241917 tcacttttacattaatgtatccaaacataaatcaattca 56241879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 426 - 536
Target Start/End: Complemental strand, 43781674 - 43781562
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||| ||||| |||||| |||||||||||||||||||||||||||   |||||||||||| |||||| |||||||   |||||||| |||||    
T  43781674 aaggataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaac 43781575  T
Q  523 ataaatcaattcac 536  Q
    || |||||||||||    
T  43781574 at-aatcaattcac 43781562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 548
Target Start/End: Complemental strand, 46830237 - 46830100
Alignment:
Q  414 aaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaa 510  Q
    |||||||| |||||||||| |||| ||| || ||||||||||| |||||||||  | | ||||||||||   |||||||| |||||| | |||||  |||    
T  46830237 aaatacaattaaaaggataatttggtcaatacacatttaaaatcaattttgatgtagaatatccaaacaacatcaactcataagaatcaattttaagaaa 46830138  T
Q  511 gtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||| ||||||||||||||||||||| || ||||||    
T  46830137 gtgtatccaaacataaatcaattcacatccaactcact 46830100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 396 - 538
Target Start/End: Original strand, 49136422 - 49136567
Alignment:
Q  396 aataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaa 492  Q
    |||| |||||||| ||| ||| |||| |||||||||| |||| ||||| |||||| ||||| |||||||||| ||| ||| ||||||   |||||||| |    
T  49136422 aatatgatatttagtttcaaaaacaattaaaaggataatttggtcattgtacattcaaaatcaattttgattaaaattattcaaacaacatcaactcata 49136521  T
Q  493 agaattacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    ||||| |||||||    ||||||| |||||||||||||||||||||    
T  49136522 agaatcacttttaagtgagtgtatccaaacataaatcaattcacat 49136567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 405 - 536
Target Start/End: Original strand, 30842041 - 30842174
Alignment:
Q  405 tttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaa---acatcaactcaaaagaattact 501  Q
    |||| |||||||||||| |||||||||| |||  ||||| |||||| ||||| ||||||||||||||||||||||   | ||||||||| |||||| |||    
T  30842041 tttagttttaaatacaattaaaaggataattttgtcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcataagaatcact 30842140  T
Q  502 tttagtaaagtgtattcaaacataaatcaattcac 536  Q
    || |   |||||||| ||||||| |||||||||||    
T  30842141 ttcaaacaagtgtatccaaacat-aatcaattcac 30842174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 405 - 536
Target Start/End: Complemental strand, 48407874 - 48407741
Alignment:
Q  405 tttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaa---acatcaactcaaaagaattact 501  Q
    |||| |||||||||||| |||||||||| |||  ||||| |||||| ||||| ||||||||||||||||||||||   | ||||||||| |||||| |||    
T  48407874 tttagttttaaatacaattaaaaggataattttgtcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcataagaatcact 48407775  T
Q  502 tttagtaaagtgtattcaaacataaatcaattcac 536  Q
    || |   |||||||| ||||||| |||||||||||    
T  48407774 ttcaaacaagtgtatccaaacat-aatcaattcac 48407741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 423 - 548
Target Start/End: Original strand, 14072430 - 14072557
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    |||||||||| |||  |||||| ||||| ||||| |||||||||||||||||||||   ||||||||||||  ||||| |||| || |||||||||| ||    
T  14072430 taaaaggataatttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcattagaatcacttctattaaagtgtatcca 14072529  T
Q  520 aacataaatcaattcacattcatctcact 548  Q
    ||||| |||||||| || |||| ||||||    
T  14072530 aacat-aatcaatttaccttcaactcact 14072557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 402 - 482
Target Start/End: Complemental strand, 55638967 - 55638887
Alignment:
Q  402 atatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||||||||||||||| ||||| ||||||||| |||||| | ||| ||||| |||||||||||| | ||||||||||    
T  55638967 atatttacttttaaatacaattaaaatgatagtttggtcattacatattcaaaatcaattttgattcatattatccaaaca 55638887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 548
Target Start/End: Complemental strand, 6138791 - 6138651
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttag 506  Q
    |||||||||  | ||||| ||||||||| |||||| ||||| ||| | |||||| ||||||||||||||||||   |||||||| | |||| | |||||     
T  6138791 ttttaaatattattaaaatgatagtttggtcattacacattcaaa-tcaattttcattcaaactatccaaacaacatcaactcatatgaatcatttttaa 6138693  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
      |||||||| ||||||||||||||||||||| || ||||||    
T  6138692 ataagtgtatccaaacataaatcaattcacatccaactcact 6138651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 535
Target Start/End: Complemental strand, 14564318 - 14564190
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaacatca---actcaaaagaattacttttag 506  Q
    ||||||||||||| |||||||||  ||| |||||||| ||| ||||| ||||||||||||| ||||||||||| ||   ||||| |||||| |||||||     
T  14564318 ttttaaatacaacaaaaaggataagttggtcattatatattcaaaatcaattttgattcaatctatccaaacaacattaactcataagaatcacttttaa 14564219  T
Q  507 -taaagtgtattcaaacataaatcaattca 535  Q
     | ||| |||| ||||||||||||||||||    
T  14564218 ctgaag-gtatccaaacataaatcaattca 14564190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 39187720 - 39187782
Alignment:
Q  479 aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattca 541  Q
    |||||||||| | |||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  39187720 aacatcaactaacaagaatcacttctagtaaagtgtatccaaacataaatcaattcacattca 39187782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 538
Target Start/End: Original strand, 15603264 - 15603405
Alignment:
Q  400 agatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaa 496  Q
    ||||||||| ||||||| ||||  ||||||||| |||||||||| | |||| ||||| |||||||| | ||| ||||||||||   |||||||| |||||    
T  15603264 agatatttagttttaaaaacaatcaaaaggataatttgatcattgtgcattcaaaatcaattttgacttaaattatccaaacaacatcaactcataagaa 15603363  T
Q  497 ttacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    | | |||||   |||| |||  ||||| ||||||||||||||    
T  15603364 tcatttttaagcaagtatatctaaacacaaatcaattcacat 15603405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 548
Target Start/End: Complemental strand, 32238214 - 32238090
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||| ||||| ||||| | |||||||||||||||||||   |||||||||||| | |||| |||| || || ||||||| |||||    
T  32238214 aaggataatttagtcattagacattcaaaatcagttttgattcaaactatccaaacaacatcaactcatatgaatcacttctaatatagtgtatccaaac 32238115  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || || ||||||||||||| ||||||    
T  32238114 at-aaccaattcacattcaactcact 32238090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 526
Target Start/End: Complemental strand, 26426275 - 26426167
Alignment:
Q  421 actaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtatt 517  Q
    |||||| ||||| | || |||||||||||| | ||| |||||||||||||  |||||||||   |||||||||||||||| ||||||| | ||| ||||     
T  26426275 actaaagggataatatggtcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaattaagcgtatc 26426176  T
Q  518 caaacataa 526  Q
    |||||||||    
T  26426175 caaacataa 26426167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 503
Target Start/End: Original strand, 9893638 - 9893721
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttt 503  Q
    |||||||||| ||| ||||||||||||| ||||| |||||| ||| ||||||||||   |||||||||||| |||||| |||||    
T  9893638 taaaaggataatttaatcattatacattcaaaatcaattttaatttaaactatccaaacaacatcaactcataagaatcacttt 9893721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 548
Target Start/End: Original strand, 15619531 - 15619669
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| ||||| |||| |||  |||||| ||||| || || | |||||||||||||||||||   ||||||||| || | |||| |||| |||    
T  15619531 ttttaaatacaattaaaatgataatttagtcattacacattcaagatca-ttttgattcaaactatccaaacaacatcaacccacatgaatcacttatag 15619629  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||  ||||| |||||||| |||||||||||| || ||||||    
T  15619630 taa--tgtatccaaacatacatcaattcacatccaactcact 15619669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 482
Target Start/End: Complemental strand, 9889493 - 9889434
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||||| |||  |||||||||||| ||||| |||||| ||||||||||||||||||    
T  9889493 taaaaggataatttagtcattatacattcaaaatcaattttaattcaaactatccaaaca 9889434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 533
Target Start/End: Complemental strand, 30887312 - 30887199
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaacatc---aactcaaaagaattacttttagtaaagtgtattca 519  Q
    ||||||| || |||| |||||| ||||| ||||| ||||||||| ||||| |||||||||||   |||||| |||||| |||||||     |||||| ||    
T  30887312 taaaaggttaatttggtcattacacattcaaaatcaattttgatacaaaccatccaaacatcattaactcataagaatcacttttatattggtgtatcca 30887213  T
Q  520 aacataaatcaatt 533  Q
    ||||||||||||||    
T  30887212 aacataaatcaatt 30887199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 51922486 - 51922532
Alignment:
Q  46 ttaaggaaggaaggatggaggtgagagttgaaatgaggtcaatttctt 93  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  51922486 ttaaggaagga-ggttggaggtgagagttgaaatgaggtcaatttctt 51922532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 538
Target Start/End: Original strand, 25312660 - 25312760
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaacatcaac---tcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcaca 537  Q
    ||||||||| |||||  |||||||||||||  |||||||||| ||||   ||| ||||||  ||||||  ||||||||| |||||| |||||||||||||    
T  25312660 attatacatctaaaagcaattttgattcaatgtatccaaacaacaacaattcataagaatcgcttttaacaaagtgtatccaaacaaaaatcaattcaca 25312759  T
Q  538 t 538  Q
    |    
T  25312760 t 25312760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 20191826 - 20191785
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  20191826 attatacatttaaaattaattttgattcaagttatccaaaca 20191785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 548
Target Start/End: Original strand, 13167470 - 13167580
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaacatc---aactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcaca 537  Q
    ||||| |||||||||  ||||||||||||| |||||||||||||   ||  || |||||| |||||||     |||||| |||| |||||||||||||||    
T  13167470 attatgcatttaaaagcaattttgattcaatctatccaaacatcattaatacataagaatcacttttaaatgggtgtatccaaatataaatcaattcaca 13167569  T
Q  538 ttcatctcact 548  Q
    |||| ||||||    
T  13167570 ttcaactcact 13167580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 482
Target Start/End: Original strand, 28986939 - 28987007
Alignment:
Q  414 aaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||| ||||| | ||  ||| ||||||  |||||||||| |||||||||||||||||||||||||    
T  28986939 aaatacaattaaaatggtaagttggtcattacccatttaaaatcaattttgattcaaactatccaaaca 28987007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 548
Target Start/End: Original strand, 54488625 - 54488660
Alignment:
Q  513 gtattcaaacataaatcaattcacattcatctcact 548  Q
    ||||||||||||||||||||||||||||| ||||||    
T  54488625 gtattcaaacataaatcaattcacattcaactcact 54488660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 538
Target Start/End: Complemental strand, 2175324 - 2175188
Alignment:
Q  405 tttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattact 501  Q
    |||| ||| ||||| || |||||||||| |||  ||||| ||| || ||||| |||||| ||||||||||||||   ||||||||| ||  | ||| |||    
T  2175324 tttagtttaaaatataattaaaaggataatttagtcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaacccatcaaaatcact 2175225  T
Q  502 tttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    ||||    |||| || |||||||||||||||||||||    
T  2175224 tttaagcgagtgcatccaaacataaatcaattcacat 2175188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 548
Target Start/End: Original strand, 33574199 - 33574233
Alignment:
Q  514 tattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||||||||||||||||||||||| ||||||    
T  33574199 tattcaaacataaatcaattcacattcaactcact 33574233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Original strand, 39733392 - 39733433
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||||| |||||||||||||||  ||||||||||||||    
T  39733392 attatacattcaaaattaattttgatcaaaactatccaaaca 39733433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 475
Target Start/End: Original strand, 47384943 - 47384984
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactat 475  Q
    |||||| ||||||||| |||||| ||||||||||||||||||    
T  47384943 tttgataattatacatctaaaatcaattttgattcaaactat 47384984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 30841973 - 30842009
Alignment:
Q  355 tgaaccaatacaaatccatttatgattttggataagt 391  Q
    |||||||||| |||||||||||||||||| |||||||    
T  30841973 tgaaccaataaaaatccatttatgattttagataagt 30842009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 505
Target Start/End: Complemental strand, 31520518 - 31520444
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatcc---aaacatcaactcaaaagaattactttta 505  Q
    |||| |||||| ||||||||||| |||||| |||||||||| ||   ||||||||||||| || ||| |||||||    
T  31520518 tttggtcattacacatttaaaatcaatttttattcaaactacccaaaaaacatcaactcataaaaatcactttta 31520444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 7e-75; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 348 - 541
Target Start/End: Original strand, 10334005 - 10334201
Alignment:
Q  348 gaattggtgaaccaatacaaatccatttatgattttggataagtcaagaataagatatttacttttaaatacaactaaaaggatagtttgatcattatac 447  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||     
T  10334005 gaatttgtgaaccaatacaaatccatttatgattttagataagtcaagaataagatatttacttttaaatacaattaaaaggatagtttggtcattataa 10334104  T
Q  448 atttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattca 541  Q
    ||| ||||| |||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  10334105 attcaaaatcaattttgattcaaactatccaaacaacgtcaactcataagaattacttttagtaaagtgtatccaaacataaatcaattcatattca 10334201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 403 - 538
Target Start/End: Complemental strand, 16246273 - 16246135
Alignment:
Q  403 tatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaatta 499  Q
    |||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||   |||||||||||  |||||| |    
T  16246273 tatttacttttacatacaattaaaaggatagtttgatcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcctaagaatca 16246174  T
Q  500 cttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    ||| || |||||||| | |||||||||||||||| ||||    
T  16246173 cttctattaaagtgtttccaaacataaatcaatttacat 16246135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 394 - 538
Target Start/End: Complemental strand, 23207254 - 23207109
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca--aacatcaactcaa 491  Q
    |||||||||||||||||||||||||||| ||||||||| ||||| |||||| |  || ||||||||||||||||||||||||| |  ||||||||||||     
T  23207254 agaataagatatttacttttaaatacaattaaaaggatggtttggtcattacaagttcaaaattaattttgattcaaactatcaaacaacatcaactcat 23207155  T
Q  492 aagaattacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    || ||| |||| ||  ||||||||| |||||||||||||||||||||    
T  23207154 aa-aatcacttgtaaaaaagtgtatccaaacataaatcaattcacat 23207109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 394 - 548
Target Start/End: Original strand, 31084121 - 31084277
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactca 490  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||| |||||| | ||| ||||| |||| ||||||||||||||||   || ||||| |||    
T  31084121 agaatgagatatttacttttaaatacaattaaaatgatagtttggtcattacatattcaaaatcaattatgattcaaactatccaaataatatcaagtca 31084220  T
Q  491 aaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
     |||||| |||||||   |||||||| |||||||||||||||||||||||| ||||||    
T  31084221 taagaatcactttta-agaagtgtatccaaacataaatcaattcacattcaactcact 31084277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 423 - 538
Target Start/End: Complemental strand, 38172466 - 38172348
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    ||||||||||||||| |||||| ||||| ||||| |||||| ||||||||||||||||||   |||||||| |||||| |||| || |||||||||| ||    
T  38172466 taaaaggatagtttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtgtatcca 38172367  T
Q  520 aacataaatcaattcacat 538  Q
    |||||||||||||||||||    
T  38172366 aacataaatcaattcacat 38172348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 394 - 548
Target Start/End: Original strand, 20813059 - 20813216
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactca 490  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||  |||||| ||||| ||||| |||||||||||||||||||||   ||||||||||||    
T  20813059 agaatgagaaatttacttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactca 20813158  T
Q  491 aaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
     |||||| ||||||    |||| ||| |||||| ||||||||||| || || ||||||    
T  20813159 taagaatcacttttgaataagtatatccaaacaaaaatcaattcaaatccaactcact 20813216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 405 - 536
Target Start/End: Complemental strand, 38125618 - 38125485
Alignment:
Q  405 tttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattact 501  Q
    |||| |||||||||||| |||||||||| |||  ||||| |||||| ||||||||||||||||||||||||||||||   ||||||||| |||||| |||    
T  38125618 tttagttttaaatacaattaaaaggataattttgtcattttacattcaaaattaattttgattcaaactatccaaacgaaatcaactcataagaatcact 38125519  T
Q  502 tttagtaaagtgtattcaaacataaatcaattcac 536  Q
    || |   |||||||| ||||||| |||||||||||    
T  38125518 ttcaaacaagtgtatccaaacat-aatcaattcac 38125485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 538
Target Start/End: Complemental strand, 52966996 - 52966850
Alignment:
Q  395 gaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaa 491  Q
    |||| |||||| || |||||||||||| |||||||||| |||| |||||| ||||||||||| ||||||||||||| ||||| |   ||||||||||||     
T  52966996 gaatgagatatataattttaaatacaattaaaaggataatttggtcattacacatttaaaatcaattttgattcaacctatctaaacaacatcaactcat 52966897  T
Q  492 aagaattacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    |||||| |||||||    || |||  |||||||||||||||||||||    
T  52966896 aagaatcacttttaagtgagggtacccaaacataaatcaattcacat 52966850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 423 - 538
Target Start/End: Original strand, 53179791 - 53179908
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac--atcaactcaaaagaattacttttagtaaagtgtattcaa 520  Q
    |||||||||| |||| ||||| |||||| ||||| |||||||||| |||||||||||||  ||||||||| || ||| |||||||  ||||||||| |||    
T  53179791 taaaaggataatttggtcattgtacattcaaaatcaattttgatttaaactatccaaacaaatcaactcataaaaatcacttttaaaaaagtgtatccaa 53179890  T
Q  521 acataaatcaattcacat 538  Q
    ||||||||||||| ||||    
T  53179891 acataaatcaatttacat 53179908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 410 - 548
Target Start/End: Original strand, 23496253 - 23496387
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| ||||| ||||||||  |||||||||||| ||||| |||||||||||||||||||||   ||||||||| |  |||||| |||||||     
T  23496253 ttttaaatacaattaaaatgatagtttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccgcaagaatcactttta- 23496351  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
          |||| |||||||||||||||||||||||| ||||||    
T  23496352 ------gtatccaaacataaatcaattcacattcaactcact 23496387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 424 - 536
Target Start/End: Complemental strand, 31619045 - 31618930
Alignment:
Q  424 aaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaa 520  Q
    |||||||||  |||||||||||||||| |||||||||||||||||||||||||||   |||||||||||| |||||| |||| ||    || |||| |||    
T  31619045 aaaaggataagttgatcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttctaagtgagagtatccaa 31618946  T
Q  521 acataaatcaattcac 536  Q
    ||||||||||||||||    
T  31618945 acataaatcaattcac 31618930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 424 - 548
Target Start/End: Original strand, 35425277 - 35425403
Alignment:
Q  424 aaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtattcaa 520  Q
    ||||||||| |||  |||||| ||||| ||||| ||||||||||||||||||||||||   ||||||||| |||||| |||| |  |||||||||| |||    
T  35425277 aaaaggataatttagtcattacacattcaaaatcaattttgattcaaactatccaaacaatatcaactcataagaatcacttctgttaaagtgtatccaa 35425376  T
Q  521 acataaatcaattcacattcatctcact 548  Q
    |||| |||||||||||||||| ||||||    
T  35425377 acat-aatcaattcacattcaactcact 35425403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 405 - 536
Target Start/End: Original strand, 42318254 - 42318387
Alignment:
Q  405 tttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattact 501  Q
    |||| |||||||||||| |||||||||| |||  ||||| |||||| ||||| ||||||||||||||||||||||||   ||||||||| |||||| |||    
T  42318254 tttagttttaaatacaattaaaaggataattttgtcattttacattcaaaatcaattttgattcaaactatccaaacgaaatcaactcataagaatcact 42318353  T
Q  502 tttagtaaagtgtattcaaacataaatcaattcac 536  Q
    || |   |||||||| ||||||| |||||||||||    
T  42318354 ttcaaacaagtgtatccaaacat-aatcaattcac 42318387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 548
Target Start/End: Original strand, 3348176 - 3348313
Alignment:
Q  414 aaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaa 510  Q
    |||||||| |||||||||| |||| ||| || ||||| ||||| |||||||||  ||| ||||||||||   |||||||| ||||||||||||||   ||    
T  3348176 aaatacaattaaaaggataatttggtcaatacacattcaaaatcaattttgatataaaatatccaaacaacatcaactcataagaattacttttaaggaa 3348275  T
Q  511 gtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||| |||||||||||||||| |||| || ||||||    
T  3348276 gtgtatccaaacataaatcaatttacatccaactcact 3348313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 434 - 548
Target Start/End: Original strand, 26519617 - 26519734
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtattcaaacataaatca 530  Q
    |||| ||||| |||||||||||| ||||||| ||||||||||||||||   ||||||| | || ||| ||||||| |  ||||||| |||||||||||||    
T  26519617 tttggtcattttacatttaaaatcaattttgtttcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 26519716  T
Q  531 attcacattcatctcact 548  Q
    ||||||||||| ||||||    
T  26519717 attcacattcaactcact 26519734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 423 - 548
Target Start/End: Complemental strand, 30811690 - 30811563
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    |||||| ||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||   ||||| ||| |||||| |||| |  |||||||||| ||    
T  30811690 taaaagaataatttaatcattacacattcaaaatcaattttgattcaaactatccaaacaatatcaagtcataagaatcacttctgttaaagtgtatcca 30811591  T
Q  520 aacataaatcaattcacattcatctcact 548  Q
    ||||| |||||||||||||||| ||||||    
T  30811590 aacat-aatcaattcacattcaactcact 30811563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 548
Target Start/End: Original strand, 38340725 - 38340875
Alignment:
Q  400 agatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaa 496  Q
    ||||||||| ||||| ||| ||  ||||||||| |||| ||| || ||||||||||| |||||| ||||||||||||||||||   |||||| | || ||    
T  38340725 agatatttagttttatatataataaaaaggataatttggtcactacacatttaaaatcaatttttattcaaactatccaaacaacgtcaacttataaaaa 38340824  T
Q  497 ttacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    ||||||||| | |||  ||| ||||||||||||||||||||| || ||||||    
T  38340825 ttacttttaat-aagcatatccaaacataaatcaattcacatccaactcact 38340875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 10333698 - 10333746
Alignment:
Q  46 ttaaggaaggaaggatggaggtgagagttgaaatgaggtcaatttcttc 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10333698 ttaaggaaggaaggatggaggtgagagttgaaatgaggtcaatttcttc 10333746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 400 - 535
Target Start/End: Original strand, 35930657 - 35930795
Alignment:
Q  400 agatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaa 496  Q
    ||||||||| |||||||||||| ||||| |||| |||| |||||| ||||| ||||| |||||||||| |||| ||||||||   ||||||||| |||||    
T  35930657 agatatttaattttaaatacaattaaaatgatattttggtcattacacattcaaaatcaattttgatttaaaccatccaaacattatcaactcataagaa 35930756  T
Q  497 ttacttttagtaaagtgtattcaaacataaatcaattca 535  Q
    | |||| ||    ||||||| ||| ||||||||||||||    
T  35930757 tgacttatacattagtgtatccaagcataaatcaattca 35930795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 393 - 537
Target Start/End: Complemental strand, 15511564 - 15511418
Alignment:
Q  393 aagaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactc 489  Q
    |||||| ||||||||| ||||||| |||| ||||||  || |||  ||||||  |||| ||||| |||||| |||||||||||||||||   ||||||||    
T  15511564 aagaatgagatatttaattttaaacacaattaaaagagtaatttcgtcattacgcattcaaaatcaatttttattcaaactatccaaacaatatcaactc 15511465  T
Q  490 aaaagaattacttttagtaaagtgtattcaaacataaatcaattcaca 537  Q
    | || ||| ||||||| | ||| |||| ||||||||||||||||||||    
T  15511464 ataaaaatcacttttaat-aagcgtatccaaacataaatcaattcaca 15511418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 535
Target Start/End: Original strand, 44224677 - 44224819
Alignment:
Q  396 aataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaa 492  Q
    |||| |||||||| ||| ||| |||| |||||||||| |||| |||||  ||||| ||||| |||||||| | ||| ||||||||||   |||||||| |    
T  44224677 aatatgatatttagtttcaaaaacaattaaaaggataatttggtcattgcacattcaaaatcaattttgactaaaattatccaaacaacatcaactcata 44224776  T
Q  493 agaattacttttagtaaagtgtattcaaacataaatcaattca 535  Q
    ||||| |||||||    ||||||| ||||||||||||||||||    
T  44224777 agaatcacttttaagtgagtgtatccaaacataaatcaattca 44224819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 426 - 548
Target Start/End: Complemental strand, 44939570 - 44939447
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||| ||||| |||||||||||||||| ||||||| ||   |||||||||||| |||||| |||| ||||||| ||||| |||||    
T  44939570 aaggataatttagtcattagacattcaaaattaattttgattaaaactattcaaacaacatcaactcataagaatcacttatagtaaa-tgtatccaaac 44939472  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || |||||||||| ||||| ||||||    
T  44939471 at-aatcaattcatattcaactcact 44939447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 426 - 548
Target Start/End: Complemental strand, 48189597 - 48189473
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||||||||| ||||| |||||| ||||||||||||||   |||||||||||| |||||| |||| |  ||| |||||| |||||    
T  48189597 aaggataatttagtcattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctgttaacgtgtatccaaac 48189498  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || |||||||| ||||||| ||||||    
T  48189497 at-aatcaatttacattcaactcact 48189473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 533
Target Start/End: Complemental strand, 10853424 - 10853313
Alignment:
Q  425 aaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaa 521  Q
    |||||||| |||| ||| || ||||| ||||| |||||||||||||||||||||   |||||||||||| |||||| |||||||    ||| ||| ||||    
T  10853424 aaaggataatttggtcaatacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaagtgagtatatccaaa 10853325  T
Q  522 cataaatcaatt 533  Q
    ||||||||||||    
T  10853324 cataaatcaatt 10853313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 536
Target Start/End: Original strand, 53074822 - 53074960
Alignment:
Q  400 agatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaa 496  Q
    ||||||||| || ||||||||| ||||||| ||  ||| || |||  |||||||||| |||||||||||||||||||||   |||||| ||||| |||||    
T  53074822 agatatttagttataaatacaattaaaagggtaagttggtctttacgcatttaaaatcaattttgattcaaactatccaaacaacatccactcataagaa 53074921  T
Q  497 ttacttttagtaaagtgtattcaaacataaatcaattcac 536  Q
    | |||||||    ||||||| ||||||| |||||||||||    
T  53074922 tcacttttaagtgagtgtatccaaacat-aatcaattcac 53074960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 423 - 548
Target Start/End: Original strand, 50664701 - 50664828
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaacatc--aactcaaaagaattacttttagtaaagtgtattcaa 520  Q
    |||||||||| ||||||||||| ||||| ||||| |||||| ||| |||||||| ||||| |  |||||  |||||| |||| ||     |||||| |||    
T  50664701 taaaaggataatttgatcattacacattcaaaatcaattttaatttaaactatctaaacaacataactcttaagaatcacttctaagtgtgtgtatccaa 50664800  T
Q  521 acataaatcaattcacattcatctcact 548  Q
    ||||||||||||||||||||| ||||||    
T  50664801 acataaatcaattcacattcaactcact 50664828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 548
Target Start/End: Complemental strand, 8424885 - 8424761
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||| ||| | ||||| |||||||||||||||||| ||   |||||||||||| |||||| |||| || | |||||||| |||||    
T  8424885 aaggataatttagtcattacacactcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttctattgaagtgtatccaaac 8424786  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || ||||||||||| |||| ||||||    
T  8424785 at-aatcaattcacgttcaactcact 8424761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 538
Target Start/End: Original strand, 42475669 - 42475769
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaacatcaac---tcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcaca 537  Q
    ||||||||| |||||  |||||||||||||  |||||||||| ||||   ||| ||||||  ||||||  |||||||||||||||| |||||||||||||    
T  42475669 attatacatctaaaagcaattttgattcaatgtatccaaacaacaacaattcataagaatcgcttttaacaaagtgtattcaaacaaaaatcaattcaca 42475768  T
Q  538 t 538  Q
    |    
T  42475769 t 42475769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 548
Target Start/End: Original strand, 25847945 - 25848102
Alignment:
Q  393 aagaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaacatc---aactc 489  Q
    |||||| | ||||||| |||| ||||||| | |||| ||| |||| |||||| ||||||||||| |||||| |||| ||||||||||||| |   |||||    
T  25847945 aagaatgaaatatttagtttttaatacaatttaaagtataatttggtcattacacatttaaaatcaatttttattc-aactatccaaacaacacaaactc 25848043  T
Q  490 aaaagaattactttt-agtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    | |||||| | |||| ||| ||| |||| |||||||||||||||||| ||| | ||||||    
T  25848044 ataagaatcatttttaagtgaag-gtatccaaacataaatcaattcatattaaactcact 25848102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 548
Target Start/End: Complemental strand, 30810078 - 30809976
Alignment:
Q  449 tttaaaattaattttgattcaaactatccaaacatcaac---tcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctc 545  Q
    ||||||| ||||||||||||||||||||||||||||| |   | | |||||| |||||||   ||| ||| |||| |||||||||||||||||| | |||    
T  30810078 tttaaaagtaattttgattcaaactatccaaacatcatcaatttataagaatcacttttaagtaagcgtaatcaatcataaatcaattcacatttaactc 30809979  T
Q  546 act 548  Q
    |||    
T  30809978 act 30809976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 538
Target Start/End: Original strand, 21224943 - 21225050
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatccaa---acatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatca 530  Q
    |||| |||||||||| | | ||| ||||||||||||||||||| ||   ||||||||||  ||||||  ||||||  ||||||||| |||||||| ||||    
T  21224943 tttggtcattatacactcataatcaattttgattcaaactatcaaaacgacatcaactcgtaagaatcgcttttaagaaagtgtatccaaacatatatca 21225042  T
Q  531 attcacat 538  Q
    ||| ||||    
T  21225043 atttacat 21225050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 538
Target Start/End: Original strand, 32357444 - 32357571
Alignment:
Q  414 aaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaa 510  Q
    |||||||| |||| ||||| ||||||||| | || || ||||| |||||| ||||||| || |||||||   ||||| || |||||| |||||||    |    
T  32357444 aaatacaattaaagggatattttgatcatcacacgttcaaaatcaattttaattcaaagtacccaaacaacatcaacacataagaatcacttttaaatga 32357543  T
Q  511 gtgtattcaaacataaatcaattcacat 538  Q
    |||| |||||||||||||||||| ||||    
T  32357544 gtgttttcaaacataaatcaatttacat 32357571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 37698530 - 37698489
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  37698530 attatacatgtaaaatcaattttgattcaaactatccaaaca 37698489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 482
Target Start/End: Original strand, 22736910 - 22736982
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||| ||||||| |||||| ||| |||| |||||| ||||| ||||| ||||||||||||||| |||| ||||    
T  22736910 tttttaatacaattaaaagtataatttgttcattacacattcaaaatcaattttgattcaaaccatcccaaca 22736982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Original strand, 28884254 - 28884295
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||||| |||| ||||||||||| ||||||||||||||    
T  28884254 attatacattcaaaaataattttgattaaaactatccaaaca 28884295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Original strand, 40244074 - 40244115
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||||||||||  |||||||||| ||||||||||||||    
T  40244074 attatacatttaaaaacaattttgattaaaactatccaaaca 40244115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 471
Target Start/End: Original strand, 14959641 - 14959709
Alignment:
Q  403 tatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaa 471  Q
    |||||| |||||||||||| ||||| |||| ||| ||| ||| ||||| ||||| || |||||||||||    
T  14959641 tatttaattttaaatacaattaaaaagataatttaatcgttacacattcaaaatcaagtttgattcaaa 14959709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 38125686 - 38125650
Alignment:
Q  355 tgaaccaatacaaatccatttatgattttggataagt 391  Q
    |||||||||| |||||||||||||||||| |||||||    
T  38125686 tgaaccaataaaaatccatttatgattttagataagt 38125650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 42318186 - 42318222
Alignment:
Q  355 tgaaccaatacaaatccatttatgattttggataagt 391  Q
    |||||||||| |||||||||||||||||| |||||||    
T  42318186 tgaaccaataaaaatccatttatgattttagataagt 42318222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 394 - 536
Target Start/End: Complemental strand, 28425660 - 28425515
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactca 490  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||| || || ||||| |||||||||||||||||||||||||   ||||||||    
T  28425660 agaataagatatttacttttaaatacaattaaaaggatagtttggtcattacacgttcaaaatcaattttgattcaaactatccaaacaacgtcaactca 28425561  T
Q  491 aaagaattacttttagtaaagtgtattcaaacataaatcaattcac 536  Q
     |||||| |||| ||  ||||||||| |||||||||||||||||||    
T  28425560 taagaatcacttgtaagaaagtgtatccaaacataaatcaattcac 28425515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 410 - 548
Target Start/End: Original strand, 43550828 - 43550969
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttag 506  Q
    |||||||||||| ||||||||||||||  || ||| ||||| ||||| |||||||||||||| ||||||||||   ||||| || |||||| |||||||     
T  43550828 ttttaaatacaattaaaaggatagtttagtctttacacattcaaaatcaattttgattcaaattatccaaacaacatcaacccacaagaatcacttttaa 43550927  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  43550928 taaagtgtatccaaacataaatcaattcacattcaactcact 43550969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 414 - 548
Target Start/End: Complemental strand, 22936961 - 22936824
Alignment:
Q  414 aaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaa 510  Q
    |||||||||||||||||||||||  |||||||| ||| ||||  || ||||||||||||||||||   ||||||||  || |||||| |||| || ||||    
T  22936961 aaatacaactaaaaggatagtttagtcattatatattcaaaaccaaatttgattcaaactatccaaacaacatcaatccacaagaatcacttctaataaa 22936862  T
Q  511 gtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  22936861 gtgtatccaaacataaatcaattcacattcaactcact 22936824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 412 - 548
Target Start/End: Original strand, 40742063 - 40742202
Alignment:
Q  412 ttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagta 508  Q
    |||||||||| |||||||||| ||||||||||| ||||| ||||| || ||| |||||||  |||||||||   |||||||| |||||| | ||||| ||    
T  40742063 ttaaatacaattaaaaggataatttgatcattacacattcaaaatcaagtttcattcaaatcatccaaacaatatcaactcataagaatcaattttatta 40742162  T
Q  509 aagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||| ||||||||||||||||||||| || ||||||    
T  40742163 aagtgtatccaaacataaatcaattcacatccaactcact 40742202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 447 - 548
Target Start/End: Complemental strand, 41289193 - 41289089
Alignment:
Q  447 catttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatc 543  Q
    |||| ||||| |||||||||||||||||||||||||   |||||  | |||||| |||||||||||||||||| |||||||||||||||||||| ||| |    
T  41289193 cattcaaaatcaattttgattcaaactatccaaacaacatcaacctataagaatcacttttagtaaagtgtatccaaacataaatcaattcacaatcaac 41289094  T
Q  544 tcact 548  Q
    |||||    
T  41289093 tcact 41289089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 434 - 534
Target Start/End: Complemental strand, 33627182 - 33627079
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatccaaacatca---actcaaaagaattacttttagtaaagtgtattcaaacataaatca 530  Q
    |||||| ||| |||||| |||||  |||||||||||||||||||||||| ||   ||||| |||||| |||||||||||||||||| |||||||||||||    
T  33627182 tttgataattttacattcaaaatcgattttgattcaaactatccaaacaacattaactcataagaatcacttttagtaaagtgtatccaaacataaatca 33627083  T
Q  531 attc 534  Q
    ||||    
T  33627082 attc 33627079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 402 - 548
Target Start/End: Original strand, 3467462 - 3467611
Alignment:
Q  402 atatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaatt 498  Q
    ||||||| || ||| || || ||||||||||||||| |||||  | ||||||||| |||||||||||||||||||||   |||||||| ||| ||||||     
T  3467462 atatttatttctaattataattaaaaggatagtttggtcattccatatttaaaatcaattttgattcaaactatccaaccaacatcaattcataagaatc 3467561  T
Q  499 acttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||   || | ||| |||||| ||||||||||||||||| ||||||    
T  3467562 acttttaaataaatatatccaaacagaaatcaattcacattcaactcact 3467611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 410 - 536
Target Start/End: Original strand, 44926778 - 44926906
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||| ||||| || || |||| |||| ||||| |||||| |||||||||||||||||||||||||||   |||||||||||| |||||| |||||||     
T  44926778 ttttaattacaattacaaagataatttggtcattttacattcaaaattaattttgattcaaactatccaaataacatcaactcataagaatcacttttaa 44926877  T
Q  507 taaagtgtattcaaacataaatcaattcac 536  Q
      |||||||| ||||||| |||||||||||    
T  44926878 acaagtgtatccaaacat-aatcaattcac 44926906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 394 - 482
Target Start/End: Original strand, 26243012 - 26243100
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    ||||| |||||||||||||||||||||| |||||| |||||||| |  |||  |||| ||||| |||||||||||||||||||||||||    
T  26243012 agaatgagatatttacttttaaatacaattaaaagaatagtttggtttttacgcattcaaaatcaattttgattcaaactatccaaaca 26243100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 410 - 547
Target Start/End: Complemental strand, 440361 - 440221
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttag 506  Q
    ||||||||||||| |||||||||  ||| |||||||||||| ||||| | ||||||||||| |||||||||||   | |||||| |||||| | |||||     
T  440361 ttttaaatacaacaaaaaggataagttggtcattatacattcaaaatcagttttgattcaatctatccaaacaacgttaactcataagaatcatttttaa 440262  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcac 547  Q
       | ||||| ||||||||||||||||||||| || |||||    
T  440261 ctgaatgtatccaaacataaatcaattcacatccaactcac 440221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 396 - 538
Target Start/End: Complemental strand, 6399294 - 6399149
Alignment:
Q  396 aataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaa 492  Q
    |||| |||||||| ||| ||| |||| ||||| |||| |||| |||||  ||||| ||||| |||||||||| ||| ||||||||||   |||||||| |    
T  6399294 aatatgatatttagtttcaaaaacaattaaaaagataatttggtcattgcacattcaaaatcaattttgattaaaattatccaaacaacatcaactcata 6399195  T
Q  493 agaattacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    ||||| |||||||    |||||||  ||||||||||||||||||||    
T  6399194 agaatcacttttaagtgagtgtatcgaaacataaatcaattcacat 6399149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 416 - 538
Target Start/End: Original strand, 8124914 - 8125038
Alignment:
Q  416 atacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagt 512  Q
    |||||| ||||||| ||  ||| ||||||| |||||||||| |||||||||||||||||||||||||   |||||||  |||||| |||||||    |||    
T  8124914 atacaattaaaagggtaagttggtcattatccatttaaaatcaattttgattcaaactatccaaacaacttcaactcctaagaatcacttttaaatgagt 8125013  T
Q  513 gtattcaaacataaatcaattcacat 538  Q
    |||| ||||||| |||||||||||||    
T  8125014 gtatccaaacat-aatcaattcacat 8125038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 402 - 535
Target Start/End: Complemental strand, 40742473 - 40742339
Alignment:
Q  402 atatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaatt 498  Q
    ||||||| ||||||| |||| ||||||| || |||| ||| || ||||||||||| |||||||||| ||| |||||||||   ||||||||| ||||||     
T  40742473 atatttaattttaaacacaattaaaagggtaatttggtcactacacatttaaaatcaattttgatttaaaatatccaaacatcatcaactcataagaatc 40742374  T
Q  499 acttttagtaaagtgtattcaaacataaatcaattca 535  Q
    ||||  | |  ||||||| ||||||||||||||||||    
T  40742373 acttacatt--agtgtatccaaacataaatcaattca 40742339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 506
Target Start/End: Original strand, 41981086 - 41981193
Alignment:
Q  402 atatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaatt 498  Q
    ||||||| || ||| ||||| ||||| ||||||||| |||||  | ||||||||| |||||||||||||| ||||||   |||||||||||| ||||||     
T  41981086 atatttatttctaattacaattaaaaagatagtttggtcattccatatttaaaatcaattttgattcaaagtatccaaacaacatcaactcataagaatc 41981185  T
Q  499 acttttag 506  Q
    ||||||||    
T  41981186 acttttag 41981193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 413 - 548
Target Start/End: Complemental strand, 25698128 - 25697991
Alignment:
Q  413 taaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaa 509  Q
    ||||||||| ||||||| || |||| | |||  | ||| ||||| |||||||||||||||||||||   |||||||||||| |||||| |||||||   |    
T  25698128 taaatacaaataaaagggtaatttggttatttaatattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaata 25698029  T
Q  510 agtgtattcaaacataaatcaattcacattcatctcact 548  Q
    ||| ||| ||||||| ||||||||||||| || ||||||    
T  25698028 agtttatccaaacat-aatcaattcacatccaactcact 25697991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 3619209 - 3619168
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  3619209 attatacatttaaaatcaattttgattcaaactatccaaaca 3619168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 535
Target Start/End: Complemental strand, 3097336 - 3097250
Alignment:
Q  452 aaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattca 535  Q
    ||||| |||||||||||||||||||||   |||||||||||| |||||| |||||||    ||| ||| ||||||||||||||||||    
T  3097336 aaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaagtgagtatatccaaacataaatcaattca 3097250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 532
Target Start/End: Original strand, 26125504 - 26125634
Alignment:
Q  405 tttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattact 501  Q
    |||| |||||||||||| ||||| |||| |||  |||||| ||||| ||||| |||||||||| ||||  |||||||   ||||||||| |||||| | |    
T  26125504 tttaattttaaatacaattaaaaagatattttcgtcattacacattcaaaatcaattttgatttaaaccgtccaaacattatcaactcataagaatcatt 26125603  T
Q  502 tttagtaaagtgtattcaaacataaatcaat 532  Q
    ||||    ||||||| |||||||||||||||    
T  26125604 tttacattagtgtatccaaacataaatcaat 26125634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 37458444 - 37458400
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaacatca 485  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||    
T  37458444 attatacattcaaaatcaattttgattcaaactatccaaacatca 37458400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 535
Target Start/End: Original strand, 29023199 - 29023304
Alignment:
Q  433 gtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatc 529  Q
    ||||| ||||| |||||| ||||| |||||||||||||||||||||   |||||||||||| || ||| | |||||   |||||||| |||| ||||| |    
T  29023199 gtttggtcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataacaatcaattttaaacaagtgtatccaaatataaacc 29023298  T
Q  530 aattca 535  Q
    ||||||    
T  29023299 aattca 29023304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 548
Target Start/End: Complemental strand, 36121674 - 36121576
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattc 540  Q
    |||| ||||| |||||||||||||||||||||||| |||||||         ||||| |||| ||||||||||||| ||||||| |||| ||||||||||    
T  36121674 attagacattcaaaattaattttgattcaaactattcaaacat--------gagaatcacttatagtaaagtgtatccaaacat-aatctattcacattc 36121584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 536
Target Start/End: Original strand, 42148971 - 42149071
Alignment:
Q  439 tcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattca 535  Q
    ||||| |||||| ||||| |||||||||||||| |||| |||||   |||||||| | |||| |||||||   |||| ||| ||||||||||||||||||    
T  42148971 tcattttacattcaaaatcaattttgattcaaattatctaaacaacatcaactcatacgaatcacttttaaataagtctatccaaacataaatcaattca 42149070  T
Q  536 c 536  Q
    |    
T  42149071 c 42149071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 24297732 - 24297691
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  24297732 attatacatgtaaaatcaattttgattcaaactatccaaaca 24297691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 482
Target Start/End: Complemental strand, 30081815 - 30081750
Alignment:
Q  417 tacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    ||||| |||||||||| |||| |||||| |||| |||||| ||||||||  |||||||||||||||    
T  30081815 tacaattaaaaggataatttggtcattacacatctaaaatcaattttgaaacaaactatccaaaca 30081750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 505
Target Start/End: Original strand, 27649725 - 27649781
Alignment:
Q  452 aaaattaattttgattcaaactatcca---aacatcaactcaaaagaattactttta 505  Q
    ||||| |||||||||||||||||||||   |||||||||||| |||||| |||||||    
T  27649725 aaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcactttta 27649781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 538
Target Start/End: Complemental strand, 38152342 - 38152215
Alignment:
Q  414 aaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattactttta-gtaa 509  Q
    |||||||| |||| ||||| |||| |||||| || || ||||| |||||||||| ||| |||||||||   ||||||||| |||||| | ||||| ||||    
T  38152342 aaatacaattaaagggatactttggtcattacacgttcaaaatcaattttgatttaaagtatccaaaccacatcaactcataagaatcatttttaagtaa 38152243  T
Q  510 agtgtattcaaacataaatcaattcacat 538  Q
    | | | | |||||||||||||||| ||||    
T  38152242 a-tatttccaaacataaatcaatttacat 38152215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 536
Target Start/End: Complemental strand, 4941939 - 4941824
Alignment:
Q  424 aaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaa 520  Q
    ||||| ||| |||| ||||| |||||| ||||| |||||| ||||||| ||| ||||||   |||||||| ||||||  ||||||   || | ||| |||    
T  4941939 aaaagaataatttggtcattttacattcaaaatcaattttaattcaaattattcaaacaacatcaactcataagaatcgcttttaaataattttatccaa 4941840  T
Q  521 acataaatcaattcac 536  Q
    ||||||||||||||||    
T  4941839 acataaatcaattcac 4941824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 536
Target Start/End: Complemental strand, 42143486 - 42143407
Alignment:
Q  460 ttttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcac 536  Q
    ||||| |||||| ||||||||||   |||||||| |||||| |||||||   |||| ||| |||||||||||||||||||    
T  42143486 ttttgtttcaaattatccaaacaacgtcaactcataagaatcacttttaaataagtttatccaaacataaatcaattcac 42143407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 15206738 - 15206774
Alignment:
Q  512 tgtattcaaacataaatcaattcacattcatctcact 548  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  15206738 tgtatccaaacataaatcaattcacattcaactcact 15206774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 410 - 548
Target Start/End: Original strand, 22482132 - 22482273
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| ||||||||||||||  |||||||||||| ||||| |||||||||||||||||||||   ||||||||| || | |||| |||||||     
T  22482132 ttttaaatacaattaaaaggatagtttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaa 22482231  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  22482232 taaagtgtatccaaacataaatcaattcacattcaactcact 22482273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 403 - 536
Target Start/End: Original strand, 41834828 - 41834964
Alignment:
Q  403 tatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaatta 499  Q
    ||||||||||||||||||| |||||||||| |||| |||||  ||||| ||||| |||||| ||||||||||||||   |||||||| ||  |||||| |    
T  41834828 tatttacttttaaatacaattaaaaggataatttggtcattgcacattcaaaatcaattttcattcaaactatccaaacaacatcaattcgtaagaatca 41834927  T
Q  500 cttttagtaaagtgtattcaaacataaatcaattcac 536  Q
    ||| ||||||||||||| |||||||||||||||||||    
T  41834928 cttctagtaaagtgtatccaaacataaatcaattcac 41834964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 393 - 538
Target Start/End: Complemental strand, 28869688 - 28869541
Alignment:
Q  393 aagaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactc 489  Q
    |||||||||||||||| |||||||||||| |||||||||| |||| |||||| ||| |  ||||  ||||| | ||||||||||||||||   |||||||    
T  28869688 aagaataagatatttagttttaaatacaattaaaaggataatttggtcattacacactcgaaatctatttt-actcaaactatccaaacaacatcaactc 28869590  T
Q  490 aaaagaattacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    | |||||| |||||||   |||||||||||||||||||||||| |||||    
T  28869589 ataagaatcacttttaagtaagtgtattcaaacataaatcaatccacat 28869541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 434 - 548
Target Start/End: Original strand, 3667821 - 3667938
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtattcaaacataaatca 530  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||   ||||||| | || ||| ||||||| |  ||||||| |||||||||||||    
T  3667821 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 3667920  T
Q  531 attcacattcatctcact 548  Q
    ||||||||||| ||||||    
T  3667921 attcacattcaactcact 3667938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 410 - 536
Target Start/End: Original strand, 32454480 - 32454608
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||| ||||| || ||||||| |||| ||||| |||||| |||||||||||||||||||||||||||   |||||||||||| |||||| |||||||     
T  32454480 ttttaattacaattacaaggataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 32454579  T
Q  507 taaagtgtattcaaacataaatcaattcac 536  Q
      |||||||| ||||||| |||||||||||    
T  32454580 acaagtgtatccaaacat-aatcaattcac 32454608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 394 - 482
Target Start/End: Original strand, 32030643 - 32030731
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    ||||| ||| |||||||||||||||||||||||||||||||||  |||||| || || ||||| |||||||||||||||||| ||||||    
T  32030643 agaatgagacatttacttttaaatacaactaaaaggatagtttagtcattacaccttcaaaatcaattttgattcaaactattcaaaca 32030731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 434 - 548
Target Start/End: Original strand, 35760156 - 35760273
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaacataaatca 530  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||||||   |||||| | || ||| | ||||| |  ||||||| |||||||||||||    
T  35760156 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcagttttaattgagtgtatccaaacataaatca 35760255  T
Q  531 attcacattcatctcact 548  Q
    ||||||||||| ||||||    
T  35760256 attcacattcaactcact 35760273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 423 - 538
Target Start/End: Complemental strand, 40495513 - 40495396
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca--tcaactcaaaagaattacttttagtaaagtgtattcaa 520  Q
    |||||||||| |||||||||| ||||||  |||| |||||||||| ||||||| ||||||  |||||||| || ||| |||||||  ||||||||| |||    
T  40495513 taaaaggataatttgatcattgtacattccaaatcaattttgatttaaactattcaaacaaatcaactcataaaaatcacttttaaaaaagtgtatccaa 40495414  T
Q  521 acataaatcaattcacat 538  Q
    ||||||||||||| ||||    
T  40495413 acataaatcaatttacat 40495396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 541
Target Start/End: Original strand, 4292121 - 4292226
Alignment:
Q  439 tcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattca 535  Q
    |||||| ||||| |||||||||||||||||||| |||||||||   ||||||  | |||||| |||| || | |||||||| ||||||||||||||||||    
T  4292121 tcattacacattcaaaattaattttgattcaaattatccaaacaatatcaaccaacaagaatcacttctaattaagtgtatccaaacataaatcaattca 4292220  T
Q  536 cattca 541  Q
    ||||||    
T  4292221 cattca 4292226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 412 - 538
Target Start/End: Complemental strand, 9275651 - 9275522
Alignment:
Q  412 ttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagta 508  Q
    |||||||||| ||||| |||| |||| |||||| ||||| ||||| || ||| |||||||  |||||||||   |||||||| |||||| | ||||| ||    
T  9275651 ttaaatacaattaaaaagataatttggtcattacacattcaaaatcaagtttcattcaaatcatccaaacaacatcaactcataagaatcaattttatta 9275552  T
Q  509 aagtgtattcaaacataaatcaattcacat 538  Q
    |||||||| |||||||||||||||| ||||    
T  9275551 aagtgtatccaaacataaatcaattaacat 9275522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 423 - 548
Target Start/End: Original strand, 40885166 - 40885295
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaatt-acttttagtaaagtgtattc 518  Q
    |||||||||| ||||||||||| | ||| ||||| |||||||||||||||||||||||||   |||||||| || || | |||||||   |||||| | |    
T  40885166 taaaaggataatttgatcattacatattcaaaatcaattttgattcaaactatccaaacaatatcaactcataaaaactcacttttaaacaagtgtgtcc 40885265  T
Q  519 aaacataaatcaattcacattcatctcact 548  Q
    |||||||||||||||||||| || ||||||    
T  40885266 aaacataaatcaattcacatccaactcact 40885295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 423 - 548
Target Start/End: Complemental strand, 33954057 - 33953930
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcc---aaacatcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    |||||||||| |||  |||||| ||||| ||||||||||||||||||||||||||    ||||||||||||  ||||| |||| || |||||||||| ||    
T  33954057 taaaaggataatttagtcattacacattcaaaattaattttgattcaaactatccgaacaacatcaactcatcagaatcacttctattaaagtgtatcca 33953958  T
Q  520 aacataaatcaattcacattcatctcact 548  Q
    ||||| |||||||| || |||| ||||||    
T  33953957 aacat-aatcaatttacgttcaactcact 33953930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 403 - 535
Target Start/End: Original strand, 10058010 - 10058145
Alignment:
Q  403 tatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaatta 499  Q
    |||| |||||| ||||||| ||||| |||| |||| || ||  || || ||||| |||||| ||||||||||||||||||   |||| ||  |||||| |    
T  10058010 tattcactttttaatacaattaaaatgataatttggtcgttgcacgttcaaaatcaattttcattcaaactatccaaacaacatcaattcgtaagaatca 10058109  T
Q  500 cttttagtaaagtgtattcaaacataaatcaattca 535  Q
    ||| ||||||||||||| ||||||||||||||||||    
T  10058110 cttctagtaaagtgtatccaaacataaatcaattca 10058145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 433 - 535
Target Start/End: Complemental strand, 41740739 - 41740634
Alignment:
Q  433 gtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatc 529  Q
    ||||| ||||| |||||| ||||| |||||||||| ||||||||||   |||||||||||| || ||| |||||||   ||||||||||||||||||| |    
T  41740739 gtttggtcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaatcacttttaaacaagtgtattcaaacataaacc 41740640  T
Q  530 aattca 535  Q
    ||||||    
T  41740639 aattca 41740634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 548
Target Start/End: Complemental strand, 2430449 - 2430325
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||| ||| | ||||| |||||||||||||||||||||   |||||||||||| |||||| |||| || | |||||||| |||||    
T  2430449 aaggataatttagtcattacacactcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttctattgaagtgtatccaaac 2430350  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || ||||||||||  |||| ||||||    
T  2430349 at-aatcaattcatgttcaactcact 2430325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 535
Target Start/End: Complemental strand, 40791227 - 40791111
Alignment:
Q  421 actaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtatt 517  Q
    |||||| ||||| | || |||||||||||| | ||| |||||||||||||  |||||||||   |||||||||||||||| ||||||| | ||| ||||     
T  40791227 actaaagggataatatggtcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaattaagcgtatc 40791128  T
Q  518 caaacataaatcaattca 535  Q
    ||||||| ||||||||||    
T  40791127 caaacat-aatcaattca 40791111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 535
Target Start/End: Original strand, 42146262 - 42146378
Alignment:
Q  421 actaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtatt 517  Q
    |||||| ||||| | || |||||||||||| | ||| |||||||||||||  |||||||||   |||||||||||||||| ||||||| | ||| ||||     
T  42146262 actaaagggataatatggtcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaattaagcgtatc 42146361  T
Q  518 caaacataaatcaattca 535  Q
    ||||||| ||||||||||    
T  42146362 caaacat-aatcaattca 42146378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 535
Target Start/End: Complemental strand, 3060376 - 3060265
Alignment:
Q  425 aaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaacatc--aactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    |||||||| |||| ||| || ||||| ||||| ||||||||||||||||||||||||| |  |||||| |||||| ||||| |||  ||| ||| |||||    
T  3060376 aaaggataatttggtcaatacacattcaaaatcaattttgattcaaactatccaaacaacataactcataagaatcactttaagt-gagtatatccaaac 3060278  T
Q  523 ataaatcaattca 535  Q
    |||||| ||||||    
T  3060277 ataaattaattca 3060265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 536
Target Start/End: Complemental strand, 7386062 - 7385972
Alignment:
Q  449 tttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcac 536  Q
    |||||||  |||||||||| ||| ||||||||||   |||||||| |||||| |||||||   ||||||||| ||||||||||||||||||    
T  7386062 tttaaaagcaattttgatttaaattatccaaacaacatcaactcataagaatcacttttaaataagtgtatttaaacataaatcaattcac 7385972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 538
Target Start/End: Complemental strand, 16158621 - 16158503
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    |||||| ||| ||||||||||| ||||| ||||| ||||||||||||||  |||||   |||||||| ||  |||||| |||||||  |||||| || ||    
T  16158621 taaaagaatattttgatcattacacattcaaaatcaattttgattcaaatcatccaaagaacatcaattcctaagaatcacttttaaaaaagtgcatcca 16158522  T
Q  520 aacataaatcaattcacat 538  Q
    || |||||| |||||||||    
T  16158521 aatataaattaattcacat 16158503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 13253209 - 13253111
Alignment:
Q  452 aaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    ||||| |||||||||||||||||| ||   |||||||||||| |||||| |||||||    ||||||| ||||||| |||||||||| ||||| ||||||    
T  13253209 aaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttttaaatgagtgtatccaaacat-aatcaattcatattcaactcact 13253111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 536
Target Start/End: Complemental strand, 39988064 - 39988007
Alignment:
Q  479 aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcac 536  Q
    |||||||||||| |||||| |||||||   |||||||| |||||||||||||||||||    
T  39988064 aacatcaactcataagaatcacttttaaataagtgtatccaaacataaatcaattcac 39988007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 7714896 - 7714955
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||||| |||  ||||||||| || ||||| |||||| ||||||||||||||||||    
T  7714896 taaaaggataatttagtcattatactttcaaaatcaattttaattcaaactatccaaaca 7714955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 2430538 - 2430496
Alignment:
Q  349 aattggtgaaccaatacaaatccatttatgattttggataagt 391  Q
    |||| ||||||||||| |||||||||||||||||| |||||||    
T  2430538 aatttgtgaaccaataaaaatccatttatgattttagataagt 2430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 410 - 541
Target Start/End: Original strand, 37639380 - 37639514
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||   ||||||||| || |||||| |||||||     
T  37639380 ttttaaatacaattaaaaggatagtttagtcattacacatttaaaattaattttgattcaaactatccaaacaacatcaacccacaagaatcacttttaa 37639479  T
Q  507 taaagtgtattcaaacataaatcaattcacattca 541  Q
    |||||| | | ||||||||||||||||||||||||    
T  37639480 taaagtttctccaaacataaatcaattcacattca 37639514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 410 - 548
Target Start/End: Original strand, 38230018 - 38230159
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| |||| |||||||||  |||||| ||||||||||| |||||||||||||||||||||   ||||||||| || | |||| |||||||     
T  38230018 ttttaaatacaattaaatggatagtttagtcattacacatttaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaa 38230117  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||| ||||| |||||||||||||||||||||||| ||||||    
T  38230118 taaaatgtatccaaacataaatcaattcacattcaactcact 38230159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 394 - 536
Target Start/End: Complemental strand, 39391312 - 39391167
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactca 490  Q
    |||||||||||||||||||||||||||| ||||||||||||| | |||||| || || ||||| |||||||||||||||||| ||   |||||||| |||    
T  39391312 agaataagatatttacttttaaatacaattaaaaggatagttaggtcattacacgttcaaaatcaattttgattcaaactattcaaacaacatcaattca 39391213  T
Q  491 aaagaattacttttagtaaagtgtattcaaacataaatcaattcac 536  Q
     |||||| |||| ||  ||||||||| |||||||||||||||||||    
T  39391212 taagaatcacttgtaagaaagtgtatccaaacataaatcaattcac 39391167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 395 - 548
Target Start/End: Complemental strand, 3622634 - 3622478
Alignment:
Q  395 gaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaa 491  Q
    |||| |||||||||||| ||||||||| |||||||||| ||||||| ||| ||||||||||| |||||||||| | ||||||||   |||||||||||      
T  3622634 gaatgagatatttacttctaaatacaattaaaaggatactttgatcgttacacatttaaaatcaattttgatttatactatccaaacaacatcaactcgt 3622535  T
Q  492 aagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||| |||||||   |||||||| ||||||||||||||||||||| || ||||||    
T  3622534 aagaatcacttttaagtaagtgtatccaaacataaatcaattcacatccaactcact 3622478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 423 - 548
Target Start/End: Complemental strand, 44967545 - 44967417
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    |||||||||| |||| |||||| | | | ||||| |||||||||||||| ||||||||||   |||||||| |||||| |||| || |||||||||||||    
T  44967545 taaaaggataatttggtcattacaaactcaaaatcaattttgattcaaattatccaaacaacatcaactcataagaatcacttctattaaagtgtattca 44967446  T
Q  520 aacataaatcaattcacattcatctcact 548  Q
    |||||||||||||||||||||| ||||||    
T  44967445 aacataaatcaattcacattcaactcact 44967417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 401 - 548
Target Start/End: Original strand, 48459651 - 48459801
Alignment:
Q  401 gatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaat 497  Q
    |||||||| ||||||||| || ||||||||||||||| |||||| ||| ||||||| |||||| || || ||||||||   |||||| | ||| ||||||    
T  48459651 gatatttaattttaaatataattaaaaggatagtttggtcattacacacttaaaatcaattttaatacatactatccaaacaacatccattcataagaat 48459750  T
Q  498 tacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
     |||||||   |||||||| |||||||||||||||||||||||| ||||||    
T  48459751 cacttttaagtaagtgtatccaaacataaatcaattcacattcaactcact 48459801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 410 - 548
Target Start/End: Original strand, 3750637 - 3750777
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttag 506  Q
    |||| ||||||| ||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||   |||| ||| |||| | | || ||     
T  3750637 tttttaatacaattaaaaggatagtttggtcattacacatt-aaaattaattttgatttaaactatccaaacaacatcaattcataagattcaattatat 3750735  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||||| ||||||||||||||||||||| || ||||||    
T  3750736 taaagtgtatccaaacataaatcaattcacatccaactcact 3750777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 423 - 548
Target Start/End: Original strand, 3342753 - 3342881
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    ||||||||||||||| |||||| | ||| ||||| |||||||||||||||||| ||||||   |||||||| |||||| |||| || |||||||||| ||    
T  3342753 taaaaggatagtttggtcattacatattcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttctattaaagtgtatcca 3342852  T
Q  520 aacataaatcaattcacattcatctcact 548  Q
    |||||||||||||||| || || ||||||    
T  3342853 aacataaatcaattcatatccaactcact 3342881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 401 - 526
Target Start/End: Original strand, 9456046 - 9456174
Alignment:
Q  401 gatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaat 497  Q
    |||||||| |||||||||||| ||||| |||| |||| ||||| |||||| ||||| ||||||||||||||||||||||||   ||||||||| ||||||    
T  9456046 gatatttagttttaaatacaattaaaaagataatttggtcattttacattcaaaatcaattttgattcaaactatccaaacaagatcaactcataagaat 9456145  T
Q  498 tacttttagtaaagtgtattcaaacataa 526  Q
     |||||||   |||||||| |||||||||    
T  9456146 cacttttaaacaagtgtatccaaacataa 9456174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 410 - 548
Target Start/End: Original strand, 37562520 - 37562661
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||  | ||||||||||||||| |||||| ||||  ||||| |||||| ||||||||||||||   |||||||||||| | |||| |||||||     
T  37562520 ttttaaatattattaaaaggatagtttggtcattacacatacaaaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaa 37562619  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
      |||||||| ||||||||||||||||||||| || ||||||    
T  37562620 ataagtgtatccaaacataaatcaattcacatccaactcact 37562661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 403 - 541
Target Start/End: Original strand, 47021862 - 47022003
Alignment:
Q  403 tatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaatta 499  Q
    ||||||||||||||||||| ||||| |||| |||| |||||  ||||| ||||| |||||| ||||||| ||||||   |||||||| ||  |||||| |    
T  47021862 tatttacttttaaatacaattaaaatgataatttggtcattgcacattcaaaatcaattttcattcaaattatccaaacaacatcaattcgtaagaatca 47021961  T
Q  500 cttttagtaaagtgtattcaaacataaatcaattcacattca 541  Q
    | | ||||||||||||| ||||||||||||||||||| ||||    
T  47021962 catctagtaaagtgtatccaaacataaatcaattcactttca 47022003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 394 - 541
Target Start/End: Original strand, 42740326 - 42740476
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactca 490  Q
    ||||| ||||||||||||||||||| || ||||| |||| |||| |||||| ||| ||||||| ||||||||| || |||||||||||   |||||| ||    
T  42740326 agaatgagatatttacttttaaatataattaaaatgatactttggtcattacacacttaaaatcaattttgatacatactatccaaacaatatcaacaca 42740425  T
Q  491 aaagaattacttttagtaaagtgtattcaaacataaatcaattcacattca 541  Q
     |||||| |||||||   |||| |||  ||||||||||||||| |||||||    
T  42740426 taagaatcacttttaagtaagtatatctaaacataaatcaattaacattca 42740476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 404 - 538
Target Start/End: Complemental strand, 12632248 - 12632111
Alignment:
Q  404 atttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattac 500  Q
    ||||| |||||||||||| |||||||||| |||| |||||| ||||| ||||| ||||||||||||||| || ||   |||||||||||| |||||| ||    
T  12632248 atttagttttaaatacaattaaaaggatattttggtcattacacattcaaaatcaattttgattcaaacaattcaaacaacatcaactcataagaatcac 12632149  T
Q  501 ttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    |||||    |||  | ||||||||||||||||||||||    
T  12632148 ttttaagcgagtacactcaaacataaatcaattcacat 12632111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 355 - 482
Target Start/End: Complemental strand, 47301779 - 47301644
Alignment:
Q  355 tgaaccaatacaaatccatttatgattttggataagtc--------aagaataagatatttacttttaaatacaactaaaaggatagtttgatcattata 446  Q
    |||||||||| |||||||||||||||||| |||||||         |||||| |||| |||| ||||||||| || |||||||||| |||  ||||| ||    
T  47301779 tgaaccaataaaaatccatttatgattttagataagtatctaaaataagaatgagatgtttagttttaaatataattaaaaggataatttagtcatttta 47301680  T
Q  447 catttaaaattaattttgattcaaactatccaaaca 482  Q
    |||| ||||| |||||||||||||||||||||||||    
T  47301679 cattcaaaatcaattttgattcaaactatccaaaca 47301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 410 - 548
Target Start/End: Complemental strand, 10372116 - 10371976
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttag 506  Q
    |||||||||||| |||| |||| ||||  ||||||  |||| ||||| |||||||||||||||||||| ||||   ||||| || |||||| |||| ||     
T  10372116 ttttaaatacaattaaa-ggatggtttagtcattacgcattcaaaatcaattttgattcaaactatccgaacaacatcaacccacaagaatcacttctaa 10372018  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||| ||||  |||||||||||||||||||||||| ||||||    
T  10372017 taaactgtaaccaaacataaatcaattcacattcaactcact 10371976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 405 - 535
Target Start/End: Complemental strand, 43738103 - 43737970
Alignment:
Q  405 tttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattact 501  Q
    |||||||| |||||||| ||||||| || |||| |||||  ||||| ||||| |||||||||||||||||||||   |||||| ||||| |||||| |||    
T  43738103 tttactttaaaatacaattaaaaggttaatttggtcatttcacattcaaaatcaattttgattcaaactatccaaacaacatccactcataagaatcact 43738004  T
Q  502 tttagtaaagtgtattcaaacataaatcaattca 535  Q
    ||||   |||| ||| |||||| |||||||||||    
T  43738003 tttaaataagtttatccaaacaaaaatcaattca 43737970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 423 - 541
Target Start/End: Complemental strand, 386627 - 386506
Alignment:
Q  423 taaaaggatagtttgatcattatacattt-aaaattaattttgattcaaactatccaaacatca--actcaaaagaattacttttagtaaagtgtattca 519  Q
    |||||||||| |||| ||||||||||||| ||||| ||||||||||||| ||||||||||| ||  | ||| |||||| |||||| |   ||| ||| ||    
T  386627 taaaaggataatttggtcattatacatttaaaaatcaattttgattcaatctatccaaacaacatcaatcataagaatcacttttcggttagtatatcca 386528  T
Q  520 aacataaatcaattcacattca 541  Q
    ||||||||||||||||||||||    
T  386527 aacataaatcaattcacattca 386506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 537
Target Start/End: Original strand, 3375430 - 3375570
Alignment:
Q  400 agatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaa 496  Q
    ||||||||| |||||||||||| |||||||||| |||| |||||  ||||| ||||| ||||||||| ||||  |||||   |||||| ||||| |||||    
T  3375430 agatatttaattttaaatacaattaaaaggataatttggtcattgcacattcaaaatcaattttgatccaaatcatccaaacaacatcgactcataagaa 3375529  T
Q  497 ttacttttagtaaagtgtattcaaacataaatcaattcaca 537  Q
    | |||||||    ||||||| |||||| |||||||||||||    
T  3375530 tcacttttaagtgagtgtatccaaacacaaatcaattcaca 3375570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 393 - 537
Target Start/End: Complemental strand, 34366157 - 34366011
Alignment:
Q  393 aagaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactc 489  Q
    |||||| ||||||||| ||||||| |||  ||||||| || |||| ||||||  | || ||||| |||||| ||||||||||||||   |||||||||||    
T  34366157 aagaatgagatatttaattttaaacacagttaaaagggtaatttggtcattacgccttcaaaatcaatttttattcaaactatccaaacaacatcaactc 34366058  T
Q  490 aaaagaattacttttagtaaagtgtattcaaacataaatcaattcaca 537  Q
    | || ||| ||||||| | ||| |||| ||||||||||||||||||||    
T  34366057 ataaaaatcacttttaat-aagcgtatccaaacataaatcaattcaca 34366011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 402 - 538
Target Start/End: Original strand, 32205868 - 32206006
Alignment:
Q  402 atatttacttttaaatacaactaaaaggatagtttgatcattat-acatttaaaattaattttgattcaaactatccaa--acatcaactcaaaagaatt 498  Q
    ||||||| ||||||||| || | ||||| || |||| |||||   ||||||||||| |||||||||||| |||||| ||  |||| |||||| ||||||     
T  32205868 atatttagttttaaataaaatttaaaggttaatttggtcatttgcacatttaaaatcaattttgattcatactatcaaacaacat-aactcataagaatc 32205966  T
Q  499 acttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    |||||||   |||||||| |||||||||||||||||||||    
T  32205967 acttttaagtaagtgtatccaaacataaatcaattcacat 32206006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 535
Target Start/End: Complemental strand, 43631843 - 43631727
Alignment:
Q  421 actaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtatt 517  Q
    |||||||||||| | |||| |||||||||| | ||| |||||||||||||  |||||||||   |||||||||||||||| ||||||| | |||  |||     
T  43631843 actaaaaggataatatgataattatacattcacaatcaattttgattcaatatatccaaacaatatcaactcaaaagaatcacttttaattaagcatatc 43631744  T
Q  518 caaacataaatcaattca 535  Q
    ||||||| ||||||||||    
T  43631743 caaacat-aatcaattca 43631727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 37886905 - 37886857
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||| |||||| ||||||||| |||||||||||||||||||||||||    
T  37886905 tttgataattatatatttaaaatcaattttgattcaaactatccaaaca 37886857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 526
Target Start/End: Original strand, 34010332 - 34010409
Alignment:
Q  452 aaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataa 526  Q
    |||||||||||||||||||||||||||   |||||||||||| |||||  |||||||    |||||||||||||||||    
T  34010332 aaaattaattttgattcaaactatccaaacaacatcaactcataagaaccacttttaaatgagtgtattcaaacataa 34010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 548
Target Start/End: Original strand, 46541564 - 46541691
Alignment:
Q  424 aaaaggatagtttgatcattatacattt-aaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    ||||||||| |||| ||||||||||||| ||||| ||||||||||||| ||||| ||||   ||||| ||| |||||| |||||| |   | | || |||    
T  46541564 aaaaggataatttggtcattatacatttaaaaatcaattttgattcaatctatcaaaacaatatcaa-tcataagaatcacttttcggtgaatatactca 46541662  T
Q  520 aacataaatcaattcacattcatctcact 548  Q
    |||||||| ||||||||||||| ||||||    
T  46541663 aacataaaccaattcacattcaactcact 46541691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 48134559 - 48134602
Alignment:
Q  439 tcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||    
T  48134559 tcattacacattcaaaatcaattttgattcaaactatccaaaca 48134602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 533
Target Start/End: Complemental strand, 36920265 - 36920211
Alignment:
Q  479 aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaatt 533  Q
    ||||||||||||||||||| || |||| | ||  |||||||||||||||||||||    
T  36920265 aacatcaactcaaaagaatcacctttaattaaacgtattcaaacataaatcaatt 36920211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 538
Target Start/End: Complemental strand, 47217705 - 47217569
Alignment:
Q  405 tttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattact 501  Q
    |||| ||| ||||| || |||||||||| |||  ||||| ||| || ||||| |||||| ||||||||||||||   ||||||||| ||  | ||| |||    
T  47217705 tttagtttaaaatataattaaaaggataatttagtcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaacccatcaaaatcact 47217606  T
Q  502 tttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    ||||    |||| || |||||||||||||||||||||    
T  47217605 tttaagcgagtgcatccaaacataaatcaattcacat 47217569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 538
Target Start/End: Original strand, 42904527 - 42904634
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaacataaatca 530  Q
    |||||| ||||| ||||||||| ||||||||||| ||| ||| ||||||   | || ||| |||||| |||||||    |||||||  ||||||||||||    
T  42904527 tttgataattatgcatttaaaagtaattttgatttaaaatatacaaacaaaattaattcataagaatcacttttaaacgagtgtatcaaaacataaatca 42904626  T
Q  531 attcacat 538  Q
    ||||||||    
T  42904627 attcacat 42904634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 12961736 - 12961793
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    ||||| |||||||||||||||| ||||| ||||||  | ||| |||||||||||||||||    
T  12961736 taaaatgatagtttgatcattacacattcaaaatt--tgttgcttcaaactatccaaaca 12961793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 7e-35; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 410 - 548
Target Start/End: Original strand, 16548068 - 16548209
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| ||||||||||||||  |||||| ||||| ||||| |||||||||||||||||||||   ||||||||| || | |||| |||||||     
T  16548068 ttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaa 16548167  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  16548168 taaagtgtatccaaacataaatcaattcacattcaactcact 16548209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 426 - 548
Target Start/End: Complemental strand, 6208218 - 6208094
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||| ||||| ||||||||||||||||||||||||| |||||   |||||||| |||||| |||||||||||||||||| |||||    
T  6208218 aaggataatttagtcattagacattcaaaattaattttgattcaaactatctaaacaacatcaactcataagaatcacttttagtaaagtgtatccaaac 6208119  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || |||||||||||||||| ||||||    
T  6208118 at-aatcaattcacattcaactcact 6208094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 402 - 548
Target Start/End: Original strand, 10826012 - 10826161
Alignment:
Q  402 atatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaatt 498  Q
    ||||||| || ||| || || ||||||||||||||| |||||  | ||||||||||||||||||||||||||||||||||   ||||||||| ||||||     
T  10826012 atatttatttctaattataattaaaaggatagtttggtcattccatatttaaaattaattttgattcaaactatccaaacaaaatcaactcataagaatc 10826111  T
Q  499 acttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||   |||| ||| |||||| ||||||||||| ||||| ||||||    
T  10826112 acttttaaataagtatatccaaacaaaaatcaattcaaattcaactcact 10826161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 410 - 548
Target Start/End: Complemental strand, 16442522 - 16442381
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttag 506  Q
    |||||||||  | ||||||||||||||| |||||| ||||| ||||| |||||| ||||||| |||||||||   ||||||||| | |||| |||||||     
T  16442522 ttttaaatattattaaaaggatagtttggtcattacacattcaaaatcaattttcattcaaattatccaaacaatatcaactcatatgaatcacttttaa 16442423  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
      |||||||| |||||||||||||||||||||||| ||||||    
T  16442422 ataagtgtatccaaacataaatcaattcacattcaactcact 16442381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 434 - 538
Target Start/End: Complemental strand, 29409399 - 29409292
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatca 530  Q
    |||| |||||||||||| |||||||||||||||||||||||||||   |||||||||||| |||||| | |||||  ||| ||||| |||||||||||||    
T  29409399 tttggtcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcatttttaaaaaactgtatccaaacataaatca 29409300  T
Q  531 attcacat 538  Q
    ||||||||    
T  29409299 attcacat 29409292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 400 - 535
Target Start/End: Complemental strand, 33899187 - 33899049
Alignment:
Q  400 agatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaa 496  Q
    ||||||||| |||||||||||| |||||||||| |||| |||||| ||||| ||||| |||||||||| |||| ||||||||   || |||||| |||||    
T  33899187 agatatttaattttaaatacaattaaaaggatattttggtcattacacattcaaaatcaattttgatttaaaccatccaaacattattaactcataagaa 33899088  T
Q  497 ttacttttagtaaagtgtattcaaacataaatcaattca 535  Q
    | |||||||    ||||||| ||||||||||||||||||    
T  33899087 tcacttttacattagtgtatccaaacataaatcaattca 33899049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 410 - 536
Target Start/End: Original strand, 13739135 - 13739263
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||| ||||| || ||||||| |||| ||||| |||||| |||||||||||||||||||||||||||   |||||||||||| |||||| |||||||     
T  13739135 ttttaattacaattacaaggataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 13739234  T
Q  507 taaagtgtattcaaacataaatcaattcac 536  Q
      |||||||| ||||||| |||||||||||    
T  13739235 acaagtgtatccaaacat-aatcaattcac 13739263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 426 - 536
Target Start/End: Original strand, 13744651 - 13744763
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||| ||||| |||||| |||||||||||||||||||||||||||   |||||||||||| |||||| |||||||   |||||||| |||||    
T  13744651 aaggataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaac 13744750  T
Q  523 ataaatcaattcac 536  Q
    || |||||||||||    
T  13744751 at-aatcaattcac 13744763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 411 - 482
Target Start/End: Original strand, 21455812 - 21455883
Alignment:
Q  411 tttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    ||||||||||| ||||| |||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||    
T  21455812 tttaaatacaattaaaaagataatttaatcattacacatttaaaattaattttgattcaaactatgcaaaca 21455883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 459 - 534
Target Start/End: Original strand, 699536 - 699613
Alignment:
Q  459 attttgattcaaactatccaa--acatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattc 534  Q
    |||||||||||||||||||||  |||| |||| | |||||||||||||||||||||| || |||||||||||||||||    
T  699536 attttgattcaaactatccaacaacattaacttataagaattacttttagtaaagtgcatccaaacataaatcaattc 699613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 548
Target Start/End: Complemental strand, 17830169 - 17830029
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| |||| | ||||||   |||||| ||||| ||||| |||||||||||||||||||||   ||||||||| || |||||  |||| ||     
T  17830169 ttttaaatacaattaaacg-atagttcagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacaagaacgacttctaa 17830071  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||| ||||   ||||||||||||||||||||||| ||||||    
T  17830070 taaactgtaactaaacataaatcaattcacattcaactcact 17830029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 526
Target Start/End: Original strand, 7215505 - 7215622
Alignment:
Q  411 tttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagt 507  Q
    |||||||| || | |||||||| ||| ||||||| | |||||||||||||||||||||||  ||| ||   ||||| ||||||  ||||| ||||||| |    
T  7215505 tttaaataaaatttaaaggataatttaatcattacatatttaaaattaattttgattcaatttatgcaaacaacattaactcatgagaatcacttttaat 7215604  T
Q  508 aaagtgtattcaaacataa 526  Q
     |||||||| |||||||||    
T  7215605 -aagtgtatacaaacataa 7215622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Original strand, 27825574 - 27825615
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    ||||||||||||||| ||||||||||  ||||||||||||||    
T  27825574 attatacatttaaaagtaattttgatcaaaactatccaaaca 27825615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 410 - 548
Target Start/End: Complemental strand, 35569375 - 35569234
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| ||||| ||||||||  |||||||||||| ||||| |||||||||||||||||||||   ||||||||| || | |||| |||||||     
T  35569375 ttttaaatacaattaaaatgatagtttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaa 35569276  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  35569275 taaagtgtatccaaacataaatcaattcacattcaactcact 35569234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 410 - 548
Target Start/End: Complemental strand, 20800450 - 20800309
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| |||||||||| |||  |||||||||||| ||||| ||| |||||||||||||||||   ||||||||| || | |||| |||||||     
T  20800450 ttttaaatacaattaaaaggataatttagtcattatacattcaaaatcaatattgattcaaactatccaaacaacatcaacccacatgaatcacttttaa 20800351  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  20800350 taaagtgtatccaaacataaatcaattcacattcaactcact 20800309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 394 - 548
Target Start/End: Original strand, 48510845 - 48511002
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactca 490  Q
    ||||| ||||||||||||||||||| ||  ||||||||||||||||||||| ||| ||||||| ||||||||| || ||||| ||   |||||||| |||    
T  48510845 agaatgagatatttacttttaaatataatcaaaaggatagtttgatcattacacacttaaaatcaattttgatacatactattcaaacaacatcaattca 48510944  T
Q  491 aaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
     |||||| |||||||   |||||||| |||||||||||||||||||||||| ||||||    
T  48510945 taagaatcacttttaagcaagtgtatccaaacataaatcaattcacattcaactcact 48511002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 394 - 548
Target Start/End: Original strand, 5410577 - 5410733
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactca 490  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||||| | ||| ||||| |||| ||||||||||||||||   |||||||| |||    
T  5410577 agaatgagatatttacttttaaatacaattaaaaggatagtttggtcattacatattcaaaatcaattatgattcaaactatccaaacaacatcaagtca 5410676  T
Q  491 aaagaattactttt-agtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
     |||||| |||||| |||  |||||||||||||||||||||||| |||| || ||||||    
T  5410677 taagaatcacttttaagt--agtgtattcaaacataaatcaatttacatccaactcact 5410733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 394 - 536
Target Start/End: Complemental strand, 40229659 - 40229514
Alignment:
Q  394 agaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactca 490  Q
    ||||||||||||||||||| |||||| | ||||||||||||||| |||||| || || ||||| |||||||||||||| ||||||   ||||||||||||    
T  40229659 agaataagatatttactttcaaatactattaaaaggatagtttggtcattacacgttcaaaatcaattttgattcaaattatccaaacaacatcaactca 40229560  T
Q  491 aaagaattacttttagtaaagtgtattcaaacataaatcaattcac 536  Q
     |||||| || | ||  ||||||||| |||||||||||||||||||    
T  40229559 gaagaatcacctgtaagaaagtgtatccaaacataaatcaattcac 40229514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 423 - 548
Target Start/End: Original strand, 31223340 - 31223468
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    ||||||||||||||| |||||| ||||| ||||| |||||| ||||||||||||||||||   |||||||| |||||| |||| || |||||||||| ||    
T  31223340 taaaaggatagtttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtgtatcca 31223439  T
Q  520 aacataaatcaattcacattcatctcact 548  Q
    ||||||||||||||||||| || ||||||    
T  31223440 aacataaatcaattcacatccaactcact 31223468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 414 - 548
Target Start/End: Original strand, 1199784 - 1199921
Alignment:
Q  414 aaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaa 510  Q
    |||||||||||||| ||||||||  |||||| || || ||||| |||||||||||||||||||||   ||||||||  || |||||| |||| || ||||    
T  1199784 aaatacaactaaaaagatagtttagtcattacacgttcaaaatcaattttgattcaaactatccaaacaacatcaatccacaagaatcacttctaataaa 1199883  T
Q  511 gtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  1199884 gtgtatccaaacataaatcaattcacattcaactcact 1199921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 426 - 548
Target Start/End: Original strand, 45710018 - 45710142
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||| ||||| ||||| |||||||||||||||||||||||||   |||||||| |||||| |||| |||||||||||||||||||    
T  45710018 aaggataatttagtcattagacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttctagtaaagtgtattcaaac 45710117  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || ||||||||||||| || ||||||    
T  45710118 at-aatcaattcacatacaactcact 45710142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 401 - 538
Target Start/End: Complemental strand, 4369984 - 4369844
Alignment:
Q  401 gatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaat 497  Q
    ||||| || |||||||||||| |||||||||| |||| |||||| ||||||||||| ||||||||||||| |||||||   |||||||||||| ||||||    
T  4369984 gatatataattttaaatacaattaaaaggataatttggtcattacacatttaaaatcaattttgattcaacctatccaaacaacatcaactcataagaat 4369885  T
Q  498 tacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
     |||||||    || |||  |||||||||||||||||||||    
T  4369884 cacttttaagtgagggtacccaaacataaatcaattcacat 4369844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 423 - 538
Target Start/End: Original strand, 12468179 - 12468296
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac--atcaactcaaaagaattacttttagtaaagtgtattcaa 520  Q
    |||||||||| |||| ||||| |||||| ||||| ||||||||||||||||||||||||  ||||||||| || ||| |||||||  ||||||||| |||    
T  12468179 taaaaggataatttggtcattgtacattcaaaatcaattttgattcaaactatccaaacaaatcaactcataaaaatcacttttaaaaaagtgtatccaa 12468278  T
Q  521 acataaatcaattcacat 538  Q
    | ||||||||||| ||||    
T  12468279 atataaatcaatttacat 12468296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 393 - 548
Target Start/End: Original strand, 13055934 - 13056091
Alignment:
Q  393 aagaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactc 489  Q
    |||||| ||||||||| ||||||| |||  ||||||| || |||  ||||||  |||| ||||| |||||| |||||||||||||||||   ||||||||    
T  13055934 aagaatgagatatttaattttaaacacagttaaaagggtaatttcgtcattacgcattcaaaatcaatttttattcaaactatccaaacaatatcaactc 13056033  T
Q  490 aaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    | || ||| ||||||| | ||| ||||||||||||||||||||||||| ||| ||||||    
T  13056034 ataaaaatcacttttaat-aagcgtattcaaacataaatcaattcacactcaactcact 13056091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 426 - 548
Target Start/End: Original strand, 6464577 - 6464701
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||| ||||| ||||| |||||||||||||||||||||   |||||||||||| |||||| |||| |||||||||||||  ||||    
T  6464577 aaggataatttagtcattagacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttctagtaaagtgtataaaaac 6464676  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || |||||||||||||| | ||||||    
T  6464677 at-aatcaattcacattaaactcact 6464701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 548
Target Start/End: Complemental strand, 42850388 - 42850251
Alignment:
Q  414 aaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaa 510  Q
    |||||||| |||||||||| |||| ||| || ||||| ||||| |||||||||  ||| ||||||||||   |||||||| |||||| |||||||   ||    
T  42850388 aaatacaattaaaaggataatttggtcaatacacattcaaaatcaattttgatgtaaaatatccaaacaacatcaactcataagaatcacttttaaggaa 42850289  T
Q  511 gtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||| ||||||||||||||||||||| || ||||||    
T  42850288 gtgtatccaaacataaatcaattcacatccaactcact 42850251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 401 - 538
Target Start/End: Complemental strand, 7826536 - 7826396
Alignment:
Q  401 gatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaat 497  Q
    ||||| || |||||||||||| ||||||||||  ||| |||||| ||||||||||| ||||||||||||| |||||||   |||||||| ||| ||||||    
T  7826536 gatatctaattttaaatacaattaaaaggataacttggtcattacacatttaaaatcaattttgattcaacctatccaaacaacatcaattcataagaat 7826437  T
Q  498 tacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
     |||||||    || |||  |||||||||||||||||||||    
T  7826436 cacttttaagtgagggtacccaaacataaatcaattcacat 7826396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 391 - 538
Target Start/End: Complemental strand, 11051502 - 11051353
Alignment:
Q  391 tcaagaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaacatc--aact 488  Q
    |||||||| ||||||||  ||||||||| || |||||||||| |||| |||||| ||||| ||||| |||||| |||||||||||||||||| |  ||||    
T  11051502 tcaagaatgagatattttgttttaaatataattaaaaggataatttggtcattacacattcaaaatcaatttttattcaaactatccaaacaacataact 11051403  T
Q  489 caaaagaattacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    |  |||||  | |||||     ||||||||||||||||||||||||||||    
T  11051402 cttaagaaccatttttaagtgtgtgtattcaaacataaatcaattcacat 11051353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 423 - 548
Target Start/End: Original strand, 25229973 - 25230100
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    |||||||||| |||| |||||| ||| | ||||| |||||| ||||||||||||||   |||||||||| | |||||| |||| || |||||||||| ||    
T  25229973 taaaaggataatttggtcattacacactcaaaatcaattttcattcaaactatccaaacaacatcaactaataagaatcacttctattaaagtgtatcca 25230072  T
Q  520 aacataaatcaattcacattcatctcact 548  Q
    ||||| |||||||||||||||| ||||||    
T  25230073 aacat-aatcaattcacattcaactcact 25230100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 548
Target Start/End: Complemental strand, 43729047 - 43728910
Alignment:
Q  413 taaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaa 509  Q
    ||||||||| ||||||| || |||| |||||  | ||| ||||| |||||||||||||||||||||   |||||||||||| |||||| |||||||   |    
T  43729047 taaatacaaataaaagggtaatttggtcatttaatattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaata 43728948  T
Q  510 agtgtattcaaacataaatcaattcacattcatctcact 548  Q
    ||| ||| ||||||| ||||||||||||| || ||||||    
T  43728947 agtttatccaaacat-aatcaattcacatccaactcact 43728910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 36205139 - 36205213
Alignment:
Q  405 tttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaa 479  Q
    |||||||| |||||||| ||||||| || |||| |||||| ||||| ||||| ||||||||||||||||||||||    
T  36205139 tttactttaaaatacaattaaaaggttaatttggtcattaaacattcaaaatcaattttgattcaaactatccaa 36205213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 548
Target Start/End: Original strand, 10470559 - 10470683
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  ||| |||||||| ||||| |||||| ||||||||||||||   |||||||||||| |||||| |||| |  ||| |||||| |||||    
T  10470559 aaggataatttagtcactatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctgttaacgtgtatccaaac 10470658  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || |||||||| ||||||| ||||||    
T  10470659 at-aatcaatttacattcaactcact 10470683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 482
Target Start/End: Complemental strand, 50977529 - 50977440
Alignment:
Q  393 aagaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||| ||||||||| ||||||| |||  ||||||| || |||  |||||| ||||| ||||| |||||| ||||||||||||||||||    
T  50977529 aagaatgagatatttaattttaaacacagttaaaagggtaatttagtcattacacattcaaaatcaatttttattcaaactatccaaaca 50977440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 536
Target Start/End: Complemental strand, 11023498 - 11023374
Alignment:
Q  414 aaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaa 510  Q
    |||||||| ||||||| ||  ||| ||||||  |||||||||| ||||||||||||||||| ||||||   ||||||||  || ||||||||||| |  |    
T  11023498 aaatacaattaaaagggtaagttggtcattacccatttaaaatcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaattga 11023399  T
Q  511 gtgtattcaaacataaatcaattcac 536  Q
     ||||| ||||||| |||||||||||    
T  11023398 atgtatccaaacat-aatcaattcac 11023374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 535
Target Start/End: Original strand, 6166069 - 6166190
Alignment:
Q  416 atacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagt 512  Q
    |||||| ||||||| ||  ||| ||||||  |||||||||| ||||||||||||||||| |||   |||||||||||  |||||| |||||||    |||    
T  6166069 atacaattaaaagggtaagttggtcattacccatttaaaatcaattttgattcaaactacccaaacaacatcaactcctaagaatcacttttaaatgagt 6166168  T
Q  513 gtattcaaacataaatcaattca 535  Q
    |||| ||||||| ||||||||||    
T  6166169 gtatccaaacat-aatcaattca 6166190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 548
Target Start/End: Original strand, 11561826 - 11561916
Alignment:
Q  461 tttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    ||||| ||||||||||||||    || |||||| |||||| |||||||  | ||| |||||||| ||||||||||||||||||| ||||||    
T  11561826 tttgagtcaaactatccaaattaaatgaactcataagaatcacttttaaaatagtatattcaaatataaatcaattcacattcaactcact 11561916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 35536027 - 35536123
Alignment:
Q  412 ttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattactttta 505  Q
    |||||||||| ||||||| || |||| |||||  |  || ||||| |||||||||||||| ||||||   |||||||||||| |||||| |||||||    
T  35536027 ttaaatacaattaaaagggtaatttggtcatttaatgttcaaaatcaattttgattcaaattatccaaacaacatcaactcataagaatcactttta 35536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Original strand, 13931603 - 13931648
Alignment:
Q  437 gatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||| | ||| ||||| |||||||||||||||||||||||||    
T  13931603 gatcattacatattcaaaatcaattttgattcaaactatccaaaca 13931648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 46581326 - 46581285
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||||| |||| ||||||||||||||| ||||||||||    
T  46581326 attatacattcaaaaataattttgattcaaattatccaaaca 46581285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 538
Target Start/End: Original strand, 47123363 - 47123470
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatccaaacatca---actcaaaagaattacttttagtaaagtgtattcaaacataaatca 530  Q
    |||||| ||||||||| |||||  |||||||||| ||  |||||||||| ||   ||| | |||||| |||||||   |||||||| |||||| ||||||    
T  47123363 tttgataattatacatctaaaagcaattttgatttaatgtatccaaacaacaccaacttataagaatcacttttaacgaagtgtatccaaacaaaaatca 47123462  T
Q  531 attcacat 538  Q
    ||||||||    
T  47123463 attcacat 47123470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 485
Target Start/End: Original strand, 25061218 - 25061254
Alignment:
Q  449 tttaaaattaattttgattcaaactatccaaacatca 485  Q
    |||||||| |||||||||||||| |||||||||||||    
T  25061218 tttaaaatcaattttgattcaaattatccaaacatca 25061254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 546
Target Start/End: Original strand, 40821791 - 40821916
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    |||||||||| |||  |||||  ||||| ||| | |||||||||||||| ||||||   |||||||||  | |||||| |||| |  |||||||||| |     
T  40821791 taaaaggataatttagtcattgcacattcaaactcaattttgattcaaattatccaaataacatcaacaaataagaatcacttatgttaaagtgtatcct 40821890  T
Q  520 aacataaatcaattcacattcatctca 546  Q
    ||||| |||||||||||||||| ||||    
T  40821891 aacat-aatcaattcacattcaactca 40821916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 485
Target Start/End: Original strand, 41571163 - 41571207
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaacatca 485  Q
    |||||| ||| ||||||||||| ||||||||||||| ||||||||    
T  41571163 attatatattcaaaattaatttcgattcaaactatctaaacatca 41571207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 50977591 - 50977551
Alignment:
Q  349 aattggtgaaccaatacaaatccatttatgattttggataa 389  Q
    |||| ||||||||||| |||||||||||||||||| |||||    
T  50977591 aatttgtgaaccaataaaaatccatttatgattttagataa 50977551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 410 - 548
Target Start/End: Complemental strand, 5916411 - 5916271
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| ||||||||||||||  |||||| ||||| ||||| |||||||||||||||||||||   |||||||||||| | |||| |||||||     
T  5916411 ttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcacatgaatcacttttaa 5916312  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||||| ||||||| |||||||||||||||| ||||||    
T  5916311 taaagtgtatccaaacat-aatcaattcacattcaactcact 5916271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 410 - 548
Target Start/End: Original strand, 36312215 - 36312355
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||||||||| ||||||||||||||  |||||| ||||| ||||| |||||||||||||||||||||   |||||||||||| | |||| |||||||     
T  36312215 ttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcacatgaatcacttttaa 36312314  T
Q  507 taaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||||| ||||||| |||||||||||||||| ||||||    
T  36312315 taaagtgtatccaaacat-aatcaattcacattcaactcact 36312355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 538
Target Start/End: Complemental strand, 26208114 - 26207968
Alignment:
Q  395 gaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaa 491  Q
    |||| |||||||| |||||||||||||  |||||||||||||| ||||| |||||||||||| |||||||||||| |  |||||   ||||||||||       
T  26208114 gaatgagatatttgcttttaaatacaatcaaaaggatagtttggtcattgtacatttaaaatcaattttgattcatataatccaaacaacatcaacttgt 26208015  T
Q  492 aagaattacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    |||||| | ||||| | ||||||||  ||||||||||||||||||||    
T  26208014 aagaatcaattttaattaagtgtatcaaaacataaatcaattcacat 26207968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 433 - 548
Target Start/End: Complemental strand, 28127434 - 28127316
Alignment:
Q  433 gtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtattcaaacataaatc 529  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||   ||||||| | || ||| ||||||| |  ||||||| ||||||||||||    
T  28127434 gtttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatc 28127335  T
Q  530 aattcacattcatctcact 548  Q
    |||||||||||| ||||||    
T  28127334 aattcacattcaactcact 28127316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 434 - 548
Target Start/End: Original strand, 2213468 - 2213585
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaagtgtattcaaacataaatca 530  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||   ||||||| | || ||| ||||||| |  ||||||| |||||||||||||    
T  2213468 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 2213567  T
Q  531 attcacattcatctcact 548  Q
    ||||||||||| ||||||    
T  2213568 attcacattcaactcact 2213585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 410 - 538
Target Start/End: Complemental strand, 7472843 - 7472713
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttag 506  Q
    |||||| ||||| || ||||||| |||| ||||| |||||| ||||| |||||||||||||||||||||   |||||||||||| |||||| |||||||     
T  7472843 ttttaattacaattacaaggataatttggtcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 7472744  T
Q  507 taaagtgtattcaaacataaatcaattcacat 538  Q
      |||||||| ||||||| |||||||||||||    
T  7472743 ataagtgtatccaaacat-aatcaattcacat 7472713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 424 - 548
Target Start/End: Complemental strand, 9988657 - 9988530
Alignment:
Q  424 aaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaa 520  Q
    |||| ||||||||| |||||| ||||| ||||| |||||| ||||||||||||||   |||||||||||| | |||| |||||||   |||||||| |||    
T  9988657 aaaatgatagtttggtcattacacattcaaaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaaataagtgtatccaa 9988558  T
Q  521 acataaatcaattcacattcatctcact 548  Q
    |||||||||||||||||| || ||||||    
T  9988557 acataaatcaattcacatccaactcact 9988530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 453 - 548
Target Start/End: Complemental strand, 1945166 - 1945068
Alignment:
Q  453 aaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||| |||||||||||||||||||||||||   ||||| || | |||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||    
T  1945166 aaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattcacattcaactcact 1945068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 426 - 548
Target Start/End: Original strand, 14821117 - 14821241
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||| ||||| ||||| |||||||||||||| ||||||||||   |||||||| |||||| |||| ||||||||||||| |||||    
T  14821117 aaggataatttagtcattagacattcaaaatcaattttgattcaaaatatccaaacaacatcaactcataagaatcacttctagtaaagtgtatccaaac 14821216  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || |||||||||||||| | ||||||    
T  14821217 at-aatcaattcacattaaactcact 14821241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 424 - 548
Target Start/End: Original strand, 28261246 - 28261373
Alignment:
Q  424 aaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaa 520  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||   |||||||||||| |||||| |||| ||    || |||| |||    
T  28261246 aaaaggataagttggtcattatacatttaaaattaattttgattcaaactattcaaacaacatcaactcataagaatcacttctatgtgagagtatccaa 28261345  T
Q  521 acataaatcaattcacattcatctcact 548  Q
    | |||||||||||||||| || ||||||    
T  28261346 atataaatcaattcacatccaactcact 28261373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 482
Target Start/End: Original strand, 28641570 - 28641652
Alignment:
Q  400 agatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||| || |||||||||||| |||||||||| |||| |||||| ||||||||||| |||||| ||||||  ||||||||||    
T  28641570 agatatctaattttaaatacaattaaaaggataatttggtcattacacatttaaaatcaattttaattcaacatatccaaaca 28641652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 506
Target Start/End: Original strand, 2234899 - 2234963
Alignment:
Q  444 atacatttaaaattaattttgattcaaactatccaaacatc--aactcaaaagaattacttttag 506  Q
    ||||||||||||||||||||||||||||||||||||||| |  |||||| |||||| ||||||||    
T  2234899 atacatttaaaattaattttgattcaaactatccaaacaacataactcataagaatcacttttag 2234963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 548
Target Start/End: Original strand, 31224690 - 31224759
Alignment:
Q  479 aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    |||||||||||| |||||| |||||||||||| | ||| ||||||||||||||||||||| || ||||||    
T  31224690 aacatcaactcataagaatcacttttagtaaaatatatccaaacataaatcaattcacatccaactcact 31224759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 548
Target Start/End: Original strand, 8170267 - 8170391
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||||||||| ||||| |||||| ||||||||||||||   |||||||||||| |||||| || | |  ||| |||||| |||||    
T  8170267 aaggataatttagtcattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcacatctgttaacgtgtatccaaac 8170366  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || |||||||| ||||||| ||||||    
T  8170367 at-aatcaatttacattcaactcact 8170391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 538
Target Start/End: Complemental strand, 25940409 - 25940280
Alignment:
Q  412 ttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagta 508  Q
    |||||| ||| || ||||||| |||| |||||||| ||| ||||| |||||||||||||||| ||||   ||||||| |||| || ||| |||| ||       
T  25940409 ttaaatgcaattagaaggataatttggtcattatatattcaaaatcaattttgattcaaactgtccaaacaacatcatctcataataatcacttctatac 25940310  T
Q  509 aagtgtattcaaacataaatcaattcacat 538  Q
     |||||||||||| ||||||||||||||||    
T  25940309 gagtgtattcaaatataaatcaattcacat 25940280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 538
Target Start/End: Complemental strand, 42516154 - 42516015
Alignment:
Q  401 gatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaat 497  Q
    |||||||| ||| ||||| || ||||| |||| |||| | |||||||||| ||||| |||||| ||||||||||||||   ||||||||||| |||||||    
T  42516154 gatatttagtttcaaatagaattaaaaagataatttggttattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcgaaagaat 42516055  T
Q  498 tacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
     | ||||     ||| ||||||||||| |||||||||||||    
T  42516054 cattttttaatgagtatattcaaacat-aatcaattcacat 42516015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 482
Target Start/End: Complemental strand, 39106855 - 39106766
Alignment:
Q  393 aagaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||| ||||||||  |||| ||||||| | |||||||| |||| ||||| || ||||||||| |||||||||||||| |||| |||||    
T  39106855 aagaatgagatattttgtttttaatacaatttaaaggataatttggtcattgtatatttaaaatcaattttgattcaaattatctaaaca 39106766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 538
Target Start/End: Original strand, 36548123 - 36548268
Alignment:
Q  395 gaataagatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaa 491  Q
    |||||||||||||| ||||||||| || |||||||||| |||  ||||| ||| || ||||| |||||| ||| ||| ||||||   ||||||||| ||     
T  36548123 gaataagatatttagttttaaatataattaaaaggataatttagtcattgtacgttcaaaatcaattttaatttaaattatccaaacaacatcaacccat 36548222  T
Q  492 aagaattacttttagtaaagtgtattcaaacataaatcaattcacat 538  Q
    || ||| | ||| |||  || |||| |||||||||||||||||||||    
T  36548223 aaaaatcattttaagt-gagagtatccaaacataaatcaattcacat 36548268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 536
Target Start/End: Original strand, 32501928 - 32502052
Alignment:
Q  414 aaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaac---atcaactcaaaagaattacttttagtaaa 510  Q
    |||||||| ||||||| ||  ||| ||||||  |||||||||| ||||||||||||||||| ||||||   ||||||||  || ||||||||||| |  |    
T  32501928 aaatacaattaaaagggtaagttggtcattacccatttaaaatcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaattga 32502027  T
Q  511 gtgtattcaaacataaatcaattcac 536  Q
     ||||| ||||||| |||||||||||    
T  32502028 atgtatccaaacat-aatcaattcac 32502052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 534
Target Start/End: Complemental strand, 44619208 - 44619104
Alignment:
Q  433 gtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatc 529  Q
    ||||| ||||| |||||| |||||  ||||| ||||||||||||||   |||||||||||| || ||| | |||||   |||||||| ||||||||||||    
T  44619208 gtttggtcattttacattcaaaatcgattttaattcaaactatccaaacaacatcaactcataataatcatttttaaacaagtgtatccaaacataaatc 44619109  T
Q  530 aattc 534  Q
    |||||    
T  44619108 aattc 44619104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 2212749 - 2212814
Alignment:
Q  400 agatatttacttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttga 465  Q
    ||||||||| ||||||||| || |||||||||| |||| |||||  ||||||||||| ||||||||    
T  2212749 agatatttaattttaaataaaattaaaaggataatttggtcattgcacatttaaaatcaattttga 2212814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 23358219 - 23358268
Alignment:
Q  433 gtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    ||||| ||||| |||||| ||||| |||||||||||||||||||||||||    
T  23358219 gtttggtcattttacattcaaaatcaattttgattcaaactatccaaaca 23358268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 536
Target Start/End: Original strand, 2215215 - 2215319
Alignment:
Q  433 gtttgatcattatacatttaaaattaattttgattcaaactatccaaaca---tcaactcaaaagaattacttttagtaaagtgtattcaaacataaatc 529  Q
    ||||| ||||| |||||| ||||| |||| | ||| ||| ||||||||||   |||||||||||  |||| |||||   |||||||| ||||||||||||    
T  2215215 gtttggtcattttacattcaaaatcaattctaatttaaattatccaaacaacatcaactcaaaa--attatttttaaacaagtgtatccaaacataaatc 2215312  T
Q  530 aattcac 536  Q
    |||||||    
T  2215313 aattcac 2215319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 541
Target Start/End: Original strand, 11240714 - 11240743
Alignment:
Q  512 tgtattcaaacataaatcaattcacattca 541  Q
    ||||||||||||||||||||||||||||||    
T  11240714 tgtattcaaacataaatcaattcacattca 11240743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 39141597 - 39141499
Alignment:
Q  452 aaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaacataaatcaattcacattcatctcact 548  Q
    ||||| |||||||||||||||||||||   |||||||||||| |||||| | |||||    ||||||| ||||||| |||||||||| || || ||||||    
T  39141597 aaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcatttttaaatgagtgtatccaaacat-aatcaattcatatccaactcact 39141499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 3853862 - 3853910
Alignment:
Q  434 tttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||| |||| ||||| ||||  |||||||||||||||||||||||||    
T  3853862 tttgataattacacattcaaaagcaattttgattcaaactatccaaaca 3853910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 34433371 - 34433335
Alignment:
Q  512 tgtattcaaacataaatcaattcacattcatctcact 548  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  34433371 tgtatccaaacataaatcaattcacattcaactcact 34433335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 423 - 538
Target Start/End: Original strand, 8391 - 8509
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattca 519  Q
    |||||||||| |||| ||||| |||||| ||||| |||||||||||||||||||||   |||||||||||| || ||| | |||||  ||||||||| ||    
T  8391 taaaaggataatttggtcattgtacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataaaaatcatttttaaaaaagtgtatcca 8490  T
Q  520 aacataaatcaattcacat 538  Q
    |||||||||||||||||||    
T  8491 aacataaatcaattcacat 8509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 426 - 548
Target Start/End: Complemental strand, 29278 - 29154
Alignment:
Q  426 aaggatagtttgatcattatacatttaaaattaattttgattcaaactatcca---aacatcaactcaaaagaattacttttagtaaagtgtattcaaac 522  Q
    ||||||| |||  |||||| ||||| ||||| |||||||||||||||||||||   |||||||| ||| |||||| |||| || |||||||||| |||||    
T  29278 aaggataatttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaattcataagaataacttctattaaagtgtatccaaac 29179  T
Q  523 ataaatcaattcacattcatctcact 548  Q
    || |||||||||||||||| ||||||    
T  29178 at-aatcaattcacattcaactcact 29154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 535
Target Start/End: Original strand, 253057 - 253185
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaacatca---actcaaaagaattacttttag 506  Q
    ||||||||||||| |||||||||  ||| |||||||| ||| ||||| ||||||||||||| ||||||||||| ||   ||||| |||||| |||||||     
T  253057 ttttaaatacaacaaaaaggataagttggtcattatatattcaaaatcaattttgattcaatctatccaaacaacattaactcataagaatcacttttaa 253156  T
Q  507 -taaagtgtattcaaacataaatcaattca 535  Q
     | ||| |||| ||||||||||||||||||    
T  253157 ctgaag-gtatccaaacataaatcaattca 253185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 9053 - 9112
Alignment:
Q  423 taaaaggatagtttgatcattatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||||| |||  |||||||||||| ||||| |||||| ||||||||||||||||||    
T  9053 taaaaggataatttagtcattatacattcaaaatcaattttaattcaaactatccaaaca 9112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 6002 - 5942
Alignment:
Q  410 ttttaaatacaactaaaaggatagtttgatcattatacatttaaaattaattttgattcaaa 471  Q
    |||||||||||| |||| |||||||||  |||||| ||||| ||||| ||||||||||||||    
T  6002 ttttaaatacaattaaa-ggatagtttagtcattacacattcaaaatcaattttgattcaaa 5942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 9299 - 9258
Alignment:
Q  441 attatacatttaaaattaattttgattcaaactatccaaaca 482  Q
    |||||||||||||||| |||||||||  ||||||||||||||    
T  9299 attatacatttaaaatcaattttgatcaaaactatccaaaca 9258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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