View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_80 (Length: 252)
Name: NF1245_low_80
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 40708755 - 40708510
Alignment:
| Q |
1 |
caagccttattccactaagcggattatcaaatctcttcatctctattttttctnnnnnnnntaaatcaaattggctataactaaggaaattgctagaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40708755 |
caagccttattccactaagcggattatcaaatctcttcatctctattttttctaaaaaaaaaaaatcaaattggctataactaaggaaattgctagaaaa |
40708656 |
T |
|
| Q |
101 |
cttacctgaaactgtatcacatattagctcccaatatggaaaattgattgaaactcaacatcaaccaaaattggaaaaccaaaccaagaaactcagatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40708655 |
cttacctgaaactgtatcacatattagctcccaatatggaaaattgattgaaactcaacatcaaccaaaattggaaaaccaaaccaagaaactcagatag |
40708556 |
T |
|
| Q |
201 |
aacctaaaaccttcataacttctaaaaatcccaccatctctgctcc |
246 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40708555 |
aacctaaaaccttcataacttctaaaaatcccaccatctcttctcc |
40708510 |
T |
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