View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_81 (Length: 252)
Name: NF1245_low_81
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_81 |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 16790291 - 16790389
Alignment:
| Q |
47 |
tattggaatttataacatttgacnnnnnnnaaaaagattttctaaatttaggatccttaacaagaccctttaaagaatatttagatatatcatattccc |
145 |
Q |
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| T |
16790291 |
tattggaatttataacatttgacttttttaaaaaagattttctaaatttaggatccttaacaagaccctttaaagaatatttagatatatcatattccc |
16790389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 16790427 - 16790466
Alignment:
| Q |
184 |
aaaacacaagagtttctctcattcgaaatgatccaaatac |
223 |
Q |
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| T |
16790427 |
aaaacacaagagtttctctcattcgaaatgatccaaatac |
16790466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 32572902 - 32572834
Alignment:
| Q |
1 |
aagcacctttaatagtaagtttttacgaaaacatatgaaatcagtgtattggaatttataacatttgac |
69 |
Q |
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| T |
32572902 |
aagcacctttaatagtaattttttacaaaaatttatgtaagtaatgtattggaatttataacatttgac |
32572834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44971744 - 44971697
Alignment:
| Q |
1 |
aagcacctttaatagtaagtttttacgaaaacatatgaaatcagtgta |
48 |
Q |
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| T |
44971744 |
aagcacctttaatagtaagtttttacgaaaatttgtgtaatcagtgta |
44971697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 38723339 - 38723281
Alignment:
| Q |
8 |
tttaatagtaagtttttacgaaaacatatgaaatcagtgtattggaatttataacattt |
66 |
Q |
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| T |
38723339 |
tttaatagcaaatttttacgaaaatctgtgtaatcagtgtattggaatttataacattt |
38723281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 25753591 - 25753523
Alignment:
| Q |
1 |
aagcacctttaatagtaagtttttacgaaaacatatgaaatcagtgtattggaatttataacatttgac |
69 |
Q |
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| T |
25753591 |
aagcacctttaatagtaagtttttatgaaaatttatgtaattaatgcattgaaacttataacatttgac |
25753523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 40425213 - 40425156
Alignment:
| Q |
9 |
ttaatagtaagtttttacgaaaacatatgaaatcagtgtattggaatttataacattt |
66 |
Q |
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| T |
40425213 |
ttaatagtaagtttttataaaaaaatttgtaatcaatgtattggaatttgtaacattt |
40425156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 22440147 - 22440210
Alignment:
| Q |
5 |
acctttaatagtaagtttttacgaaaacatatgaaatcagtgtattggaatttataacatttga |
68 |
Q |
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| T |
22440147 |
acctttaatagtaagtttttatgaaaatatatgtaatcaatgcattgaaacttgtaacatttga |
22440210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 4806511 - 4806568
Alignment:
| Q |
9 |
ttaatagtaagtttttacgaaaacatatgaaatcagtgtattggaatttataacattt |
66 |
Q |
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| T |
4806511 |
ttaatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaacattt |
4806568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 32692960 - 32693017
Alignment:
| Q |
9 |
ttaatagtaagtttttacgaaaacatatgaaatcagtgtattggaatttataacattt |
66 |
Q |
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||||||||||||||||| ||||| || || ||||| ||||||| ||||| |||||||| |
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| T |
32692960 |
ttaatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaacattt |
32693017 |
T |
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