View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_85 (Length: 251)
Name: NF1245_low_85
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 32765340 - 32765583
Alignment:
| Q |
1 |
ctgtttgatcaacttataaaatcagacacccgcaatttgaaggtctgacaatggatactattacattattctaattaattaaatcaggaaacagtgtcgt |
100 |
Q |
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| T |
32765340 |
ctgtttgatcaacttataaaatcagacacccacaatttgaaggtctgacaatggatactattacattatattaattaattaaatcaggaaacagtgtcgt |
32765439 |
T |
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| Q |
101 |
tgtaataaataagaaatggcattatgaaaatcagatttagtttcaaaactaggcacaaaccacgggtatttataatacatcaaaccatggtcaacaatta |
200 |
Q |
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| T |
32765440 |
tgtaataaataagaaatggcattatgaaaatcagatttagtttcaaaactaggcacaaaccatgggtatttataatacatcaaaccatggtcaacaatta |
32765539 |
T |
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| Q |
201 |
gacgtattaatggaattcacccacttctgtatcttttcatctca |
244 |
Q |
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| T |
32765540 |
gacgtattaatggaattcacccacttctgtatcttttcttctca |
32765583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 32754829 - 32754886
Alignment:
| Q |
145 |
aaaactaggcacaaaccacgggtatttataatacatcaaaccatggtcaacaattaga |
202 |
Q |
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||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||| |
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| T |
32754829 |
aaaactaggcataaactgagggtatttataatacatcaaatcatgatcaacaattaga |
32754886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 32754642 - 32754800
Alignment:
| Q |
1 |
ctgtttgatcaacttataaaatcagacacccgcaatttgaaggtc---------tgacaatggatactattacattattctaattaattaaatcagg--a |
89 |
Q |
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| T |
32754642 |
ctgtttgatcagcttataaaatcagacacccacaacttaaaggtctggcacaagtggcaatggatactatcacattttattagttaattaaatcgagaaa |
32754741 |
T |
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| Q |
90 |
aacagtgtcgttgtaataaataagaaatggcattatgaaaatcagatttagtttcaaaa |
148 |
Q |
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| T |
32754742 |
aaaagtgtcattgcaataaatacgaaatggcaatataaaaatcaaatttaatttaaaaa |
32754800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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