View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_88 (Length: 250)
Name: NF1245_low_88
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 21307501 - 21307275
Alignment:
| Q |
17 |
cactataaatattaagcatattaaattaatgaaa-catcataaaacaaatctatcttgtacacatatacatcttaaaaacaacttgtaatcaaaatggtt |
115 |
Q |
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| T |
21307501 |
cactataaatattaagcatattaaattcatcaaatcatcataaaacaaatctatcttgaacacatatacatcttaaaaacaactagaaatcaaaatggtt |
21307402 |
T |
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| Q |
116 |
gttgtaggtggaattttgaagctcaagaataatgtcttcaaaaagctccaaaaaaccctattaatgggaagaaaggataataaatcaaggtatgtggcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
21307401 |
gttgtaggtggaattttgaagctcaagaataatgtcttcaaaaagctccaaaaaaccctattattgggaagaaaggataataaatcaaggtatgaggcaa |
21307302 |
T |
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| Q |
216 |
aggatgtgaaaaaaggacatattgttg |
242 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
21307301 |
aggatgtgaaaaaaggacattttgttg |
21307275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 21298082 - 21297856
Alignment:
| Q |
17 |
cactataaatattaagcatattaaattaatgaaa-catcataaaacaaatctatcttgtacacatatacatcttaaaaacaacttgtaatcaaaatggtt |
115 |
Q |
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|
|||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |
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| T |
21298082 |
cactataaatataaagcatattaaattgatcaaatcatcataaaacaaatctatcttgaacacatatacatcttaaaaacaactagaaatcaaaatggtt |
21297983 |
T |
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| Q |
116 |
gttgtaggtggaattttgaagctcaagaataatgtcttcaaaaagctccaaaaaaccctattaatgggaagaaaggataataaatcaaggtatgtggcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
21297982 |
gttgtaggtggaattttgaagctcaagaataatgtcttcattaagctccacaaaaccctattaatgggaagaaatgattataaatcaaggtatgtggcaa |
21297883 |
T |
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| Q |
216 |
aggatgtgaaaaaaggacatattgttg |
242 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
21297882 |
aggatgtgaaaaaaggacattttgttg |
21297856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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