View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_97 (Length: 205)
Name: NF1245_low_97
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_97 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 35231339 - 35231486
Alignment:
| Q |
34 |
ttgcaaaattgtgccattcatatattctacaaaagttgttcaaaatccaaatatctgatgattgttcgcagtgtaaattaggaaaaggtatgccaagaac |
133 |
Q |
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| T |
35231339 |
ttgcaaaattgtgccattcatatattctagaaaagttgttcaaaatccaaatatctgatgattgttcaaagtgtaaattaggaaaaggtatgccaagaac |
35231438 |
T |
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| Q |
134 |
ctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagagg |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35231439 |
ctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagagg |
35231486 |
T |
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Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 52919607 - 52919754
Alignment:
| Q |
34 |
ttgcaaaattgtgccattcatatattctacaaaagttgttcaaaatccaaatatctgatgattgttcgcagtgtaaattaggaaaaggtatgccaagaac |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |
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| T |
52919607 |
ttgcaaaattgtgccattcatatattctacaaaagttgttcaaaatccaaatatctgatgattgttcaaagtgtatatcaggaaaaggtatgccaagaac |
52919706 |
T |
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| Q |
134 |
ctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagagg |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52919707 |
ctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagagg |
52919754 |
T |
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