View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12460_low_1 (Length: 368)

Name: NF12460_low_1
Description: NF12460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12460_low_1
NF12460_low_1
[»] chr7 (14 HSPs)
chr7 (19-360)||(36221014-36221355)
chr7 (94-360)||(36217021-36217295)
chr7 (32-247)||(35982346-35982561)
chr7 (32-247)||(36003758-36003973)
chr7 (100-253)||(36226293-36226446)
chr7 (124-335)||(35958415-35958634)
chr7 (121-335)||(35977867-35978089)
chr7 (121-335)||(35999279-35999501)
chr7 (121-253)||(35947207-35947339)
chr7 (19-256)||(35973631-35973868)
chr7 (19-256)||(35995043-35995280)
chr7 (278-357)||(35973898-35973977)
chr7 (278-357)||(35995310-35995389)
chr7 (285-335)||(35926323-35926373)
[»] chr1 (2 HSPs)
chr1 (285-331)||(18126298-18126344)
chr1 (100-229)||(18126105-18126234)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 36221355 - 36221014
Alignment:
Q  19 ccaataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36221355 ccaataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcacaagtccaaaccttgtcc 36221256  T
Q  119 cgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggca 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36221255 cgtcagctgccaccttattcaatctatctctaatctctttgattttatgtgacatcctaaaacggaaagctagtggatttgaggaagaaaacaagtggca 36221156  T
Q  219 taccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctg 318  Q
    ||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221155 taccttcattcgagtgctgccagaagctttcacaattttattttttcttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctg 36221056  T
Q  319 cctcaaccattcacgcagagcatgttgttggttcttcttctc 360  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36221055 cctcaaccattcacgcagagcatgttgttggttcttcttctc 36221014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 94 - 360
Target Start/End: Complemental strand, 36217295 - 36217021
Alignment:
Q  94 attctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtg 193  Q
    |||||| ||||||||||| | ||||| ||||||||||| |||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||  | |    
T  36217295 attctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcg 36217196  T
Q  194 gatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc--------- 284  Q
    |||| ||||||||||| ||||||||||||||||  || ||||| ||||||||||  ||||||||       | ||||||||||||||||||             
T  36217195 gattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcc-tgtcttgcaactcaaatccatccaata 36217097  T
Q  285 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcttctc 360  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||| ||  ||||||||  |||||||||||||    
T  36217096 catcttcagcatcatagcagatgttttgaatctgccttaaccattcacacaaggcatgttgccggttcttcttctc 36217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 35982346 - 35982561
Alignment:
Q  32 aagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccac 131  Q
    |||||||||| |  |||||||| ||||||||  | ||||||| | |  ||||  ||||||| ||||||  |||||||||| | ||||| |||||||||||    
T  35982346 aagcatcaacatgggaatgagtcaattctcttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaacttagtcccatcagctgccac 35982445  T
Q  132 cttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcga 231  Q
    |||||  |||||||| ||||| |||||||||  ||||| |||||||| ||| |||||  ||||||| ||||||||||| ||||||| ||||||| | |||    
T  35982446 cttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttcgtccga 35982545  T
Q  232 gtgctgccagaagctt 247  Q
    ||||||||||||||||    
T  35982546 gtgctgccagaagctt 35982561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 36003758 - 36003973
Alignment:
Q  32 aagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccac 131  Q
    |||||||||| |  |||||||| ||||||||  | ||||||| | |  ||||  ||||||| ||||||  |||||||||| | ||||| |||||||||||    
T  36003758 aagcatcaacatgggaatgagtcaattctcttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaacttagtcccatcagctgccac 36003857  T
Q  132 cttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcga 231  Q
    |||||  |||||||| ||||| |||||||||  ||||| |||||||| ||| |||||  ||||||| ||||||||||| ||||||| ||||||| | |||    
T  36003858 cttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttcgtccga 36003957  T
Q  232 gtgctgccagaagctt 247  Q
    ||||||||||||||||    
T  36003958 gtgctgccagaagctt 36003973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 100 - 253
Target Start/End: Original strand, 36226293 - 36226446
Alignment:
Q  100 gcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttg 199  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||||||  |  || |||| |||||||||||||  ||||| | |    
T  36226293 gcaagtccaaacctagtcccatcagctgccaccttattcaatctatccctaatctctttgattcgacatgccatcttaaaacggaaagcaagtggactag 36226392  T
Q  200 aggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaa 253  Q
    |||||||||| || |||| ||||||||| | ||||||||  ||||||| |||||    
T  36226393 aggaagaaaaaaattggcgtaccttcatcctagtgctgcatgaagcttccacaa 36226446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 124 - 335
Target Start/End: Original strand, 35958415 - 35958634
Alignment:
Q  124 gctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcatacct 223  Q
    ||||||||||||| ||||||||  ||||||||||||||||  || | |||  |||||||||||||  ||| ||| ||||||||||||||||||| |||||    
T  35958415 gctgccaccttatccaatctatccctaatctctttgatttggtgcgccattttaaaacggaaagcaagtgaattagaggaagaaaacaagtggcgtacct 35958514  T
Q  224 tcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgttttgta 314  Q
    |||  || ||||| |||||||||| ||||| |||       |||||||||||| |||||||         ||||||||||||||||||| || ||||| |    
T  35958515 tcacccgtgtgcttccagaagcttccacaacttg-ttttcgcttgtcttgcaagtcaaatccatccaatacatcttcagcatcatagcatatattttgaa 35958613  T
Q  315 cctgcctcaaccattcacgca 335  Q
     |||||||| |||||||||||    
T  35958614 tctgcctcagccattcacgca 35958634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 335
Target Start/End: Original strand, 35977867 - 35978089
Alignment:
Q  121 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 220  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||||||| |  ||||||| ||||||||||| ||||||| ||    
T  35977867 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta 35977966  T
Q  221 ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt 311  Q
    ||||||  ||  |||| | |||||||||||||| |||       |||||||||||| | |||||         ||||||||||||||||||| || ||||    
T  35977967 ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt 35978065  T
Q  312 gtacctgcctcaaccattcacgca 335  Q
    | | |||||||| |||||||||||    
T  35978066 gaatctgcctcagccattcacgca 35978089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 335
Target Start/End: Original strand, 35999279 - 35999501
Alignment:
Q  121 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 220  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||||||| |  ||||||| ||||||||||| ||||||| ||    
T  35999279 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta 35999378  T
Q  221 ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt 311  Q
    ||||||  ||  |||| | |||||||||||||| |||       |||||||||||| | |||||         ||||||||||||||||||| || ||||    
T  35999379 ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt 35999477  T
Q  312 gtacctgcctcaaccattcacgca 335  Q
    | | |||||||| |||||||||||    
T  35999478 gaatctgcctcagccattcacgca 35999501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 121 - 253
Target Start/End: Original strand, 35947207 - 35947339
Alignment:
Q  121 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 220  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||| ||| |  ||||||| ||||||||||| ||||||  ||    
T  35947207 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacgaaaaacaagtggattagaggaagaaaagaagtggacta 35947306  T
Q  221 ccttcattcgagtgctgccagaagctttcacaa 253  Q
     |||||  || ||||| | ||||||||||||||    
T  35947307 acttcacccgtgtgcttcgagaagctttcacaa 35947339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 35973631 - 35973868
Alignment:
Q  19 ccaataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcc 118  Q
    |||||||||||||||||||| || |  |||| ||| ||||||||||| |||| |||| | |||||  ||   |||||| ||||||| |||||| |  |||    
T  35973631 ccaataacacttgaagcatcgacatgggaattagtcaattctctcctatgcaaaacaagttcaggaccattgtcgattttcgcaagaccaaacttgttcc 35973730  T
Q  119 cgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggca 218  Q
    | || ||||| ||||||| ||| ||||  | |||  ||||||| | |||   ||| ||| |||||||| |  ||||||| ||||| ||||| |||| ||     
T  35973731 catcggctgctaccttatccaacctatcccgaatgcctttgatctgatggtccattctagaacggaaaacaagtggattggaggaggaaaagaagtagct 35973830  T
Q  219 taccttcattcgagtgctgccagaagctttcacaaatt 256  Q
    ||||||||| |  |||||||||||||| | ||||||||    
T  35973831 taccttcatgctcgtgctgccagaagcatccacaaatt 35973868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 35995043 - 35995280
Alignment:
Q  19 ccaataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcc 118  Q
    |||||||||||||||||||| || |  |||| ||| ||||||||||| |||| |||| | |||||  ||   |||||| ||||||| |||||| |  |||    
T  35995043 ccaataacacttgaagcatcgacatgggaattagtcaattctctcctatgcaaaacaagttcaggaccattgtcgattttcgcaagaccaaacttgttcc 35995142  T
Q  119 cgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggca 218  Q
    | || ||||| ||||||| ||| ||||  | |||  ||||||| | |||   ||| ||| |||||||| |  ||||||| ||||| ||||| |||| ||     
T  35995143 catcggctgctaccttatccaacctatcccgaatgcctttgatctgatggtccattctagaacggaaaacaagtggattggaggaggaaaagaagtagct 35995242  T
Q  219 taccttcattcgagtgctgccagaagctttcacaaatt 256  Q
    ||||||||| |  |||||||||||||| | ||||||||    
T  35995243 taccttcatgctcgtgctgccagaagcatccacaaatt 35995280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 357
Target Start/End: Original strand, 35973898 - 35973977
Alignment:
Q  278 tcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttctt 357  Q
    |||||| |||||||||||||  ||||||||||||| | |||||||| ||||||||||||  |||| | ||||| ||||||    
T  35973898 tcaaatacatcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcagcccatgcttttggtccttctt 35973977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 357
Target Start/End: Original strand, 35995310 - 35995389
Alignment:
Q  278 tcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttctt 357  Q
    |||||| |||||||||||||  ||||||||||||| | |||||||| ||||||||||||  |||| | ||||| ||||||    
T  35995310 tcaaatacatcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcagcccatgcttttggtccttctt 35995389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 35926323 - 35926373
Alignment:
Q  285 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgca 335  Q
    ||||||||||||||||||| || ||||| | |||||||| |||||||||||    
T  35926323 catcttcagcatcatagcatatattttgaatctgcctcagccattcacgca 35926373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 18126298 - 18126344
Alignment:
Q  285 catcttcagcatcatagcagatgttttgtacctgcctcaaccattca 331  Q
    |||||||||||||||||||||| ||||||| |||||||  |||||||    
T  18126298 catcttcagcatcatagcagatattttgtatctgcctccgccattca 18126344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 18126105 - 18126234
Alignment:
Q  100 gcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttg 199  Q
    |||||||||||| | ||||| || | ||| ||||||| ||||||||  ||||| ||||| ||||  | || |||||||| ||| |||||  ||| ||| |    
T  18126105 gcaagtccaaacttagtcccatcggttgctaccttatccaatctatccctaatatctttaatttgttttgccatcctaagacgaaaagcaagtgaattgg 18126204  T
Q  200 aggaagaaaacaagtggcataccttcattc 229  Q
    ||||| | || ||||||| |||||||||||    
T  18126205 aggaacagaagaagtggcgtaccttcattc 18126234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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