View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12460_low_4 (Length: 256)
Name: NF12460_low_4
Description: NF12460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12460_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 16370193 - 16370374
Alignment:
| Q |
56 |
catcaatgacaattcaaagtcttaggattttaagtgaaaatttagtgtcaaagcgtgtgtgagttttggtctttagctcgttgttactcccaaaagatag |
155 |
Q |
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| T |
16370193 |
catcaatgacaattcaaagtcttaaaattttaagtggaaatttggtgtcaaagcgtatgtgagttttggtctttagctcgttgttactcccaaaagatag |
16370292 |
T |
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| Q |
156 |
attgatatatgaataaaaatgagacattcttacttaaaagtgtgtgagataattcaactctcatttattttaatgcacatgt |
237 |
Q |
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| T |
16370293 |
atagatatatgaataaaaatgagatattcttatttgaaagtgtgtgagataattcaactctcatttattttaatgcacatgt |
16370374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 205
Target Start/End: Original strand, 16370647 - 16370794
Alignment:
| Q |
56 |
catcaatgacaattcaaagtcttaggattttaagtgaaaatttagtgtcaaagcgt-gtgtgagttttggtctttagctcgttgttactcccaaaagata |
154 |
Q |
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| T |
16370647 |
catcaacgtcaattcaaaatcttaagattttaagtaaaaatttggtgtcaaagaatcgtgtgagttttgatttttaactcgttgttactcccaaacaata |
16370746 |
T |
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| Q |
155 |
gattgatatatgaataaaaatgagacatt-cttacttaaaagtgtgtgagat |
205 |
Q |
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| T |
16370747 |
----gatagatgaataaaaataagatattacttacttgaaagcgtgtgagat |
16370794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 16369850 - 16369885
Alignment:
| Q |
201 |
gagataattcaactctcatttattttaatgcacatg |
236 |
Q |
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| T |
16369850 |
gagatgattcaactctcatttattttaatgcacatg |
16369885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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