View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12460_low_5 (Length: 251)
Name: NF12460_low_5
Description: NF12460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12460_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 5820394 - 5820622
Alignment:
| Q |
19 |
gaaaaagaagtggattcaacacattacaagcagatagtgggatcaaccaacaaaaataatctctcaatctaaacaaacactcacatttcactaatgttga |
118 |
Q |
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| T |
5820394 |
gaaaaagaagtggattcaacacattagaagcaaatagtgggatcaactaacaaaaataatctctcaatctaaacaaacactcacatttcactaatgttga |
5820493 |
T |
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| Q |
119 |
gattttatacttccacaacttgtttctctttatttgaacattctctttcacatctcaacccaacaaattattttatggcattcctcat---------ttt |
209 |
Q |
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| T |
5820494 |
gattttatacttccacaacttgtttctctttatatgaacattctctttcacatctcaacccaacaaattattttatggcattcctcatattatctgattt |
5820593 |
T |
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| Q |
210 |
tgaaataacaatggcaaaccctaacttct |
238 |
Q |
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| T |
5820594 |
tgaaataacaatgtcaaaccctaacttct |
5820622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 32251837 - 32251891
Alignment:
| Q |
71 |
aaaataatctctcaatctaaacaaacactcacatttcactaatgttgagatttta |
125 |
Q |
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||||||| |||||||||||||| || || |||||||||| |||||||||||||| |
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| T |
32251837 |
aaaataacctctcaatctaaacgaaaacccacatttcacggatgttgagatttta |
32251891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 35011162 - 35011094
Alignment:
| Q |
71 |
aaaataatctctcaatctaaacaaacactcacatttcactaatgttgagattttatacttccacaactt |
139 |
Q |
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||||||| |||| ||||||||||||||||| |||||||||| | || |||||||| | ||| ||||||| |
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| T |
35011162 |
aaaataacctcttaatctaaacaaacactcgcatttcactactattaagattttacatttcgacaactt |
35011094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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