View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12461_high_1 (Length: 601)

Name: NF12461_high_1
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12461_high_1
NF12461_high_1
[»] chr3 (14 HSPs)
chr3 (1-591)||(1717433-1718023)
chr3 (357-586)||(1738935-1739164)
chr3 (393-580)||(1754112-1754300)
chr3 (444-580)||(1748796-1748932)
chr3 (1-99)||(1739395-1739493)
chr3 (1-89)||(1749254-1749342)
chr3 (1-81)||(1754877-1754957)
chr3 (196-277)||(46893416-46893497)
chr3 (196-250)||(13639459-13639513)
chr3 (125-277)||(54186928-54187080)
chr3 (196-277)||(29235677-29235758)
chr3 (196-264)||(48543213-48543281)
chr3 (196-265)||(20909363-20909432)
chr3 (196-228)||(54140812-54140844)
[»] chr8 (6 HSPs)
chr8 (195-277)||(30085447-30085529)
chr8 (196-277)||(33440574-33440655)
chr8 (196-277)||(28700583-28700664)
chr8 (196-274)||(6580862-6580939)
chr8 (198-248)||(31703822-31703872)
chr8 (213-277)||(16895271-16895335)
[»] chr4 (5 HSPs)
chr4 (195-280)||(51475233-51475318)
chr4 (196-264)||(31699549-31699617)
chr4 (196-260)||(37306476-37306540)
chr4 (195-272)||(6540258-6540335)
chr4 (196-250)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (196-263)||(709-776)
[»] chr5 (7 HSPs)
chr5 (196-280)||(41020248-41020332)
chr5 (196-258)||(42958487-42958549)
chr5 (196-264)||(5990589-5990657)
chr5 (196-264)||(18237206-18237274)
chr5 (196-264)||(30892150-30892218)
chr5 (196-264)||(32153763-32153831)
chr5 (179-251)||(34320913-34320985)
[»] chr1 (5 HSPs)
chr1 (196-251)||(932035-932090)
chr1 (204-277)||(11709656-11709729)
chr1 (196-277)||(19078941-19079022)
chr1 (196-277)||(19126829-19126910)
chr1 (198-264)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (195-277)||(17878710-17878792)
chr7 (196-264)||(557447-557515)
chr7 (195-251)||(47822035-47822091)
chr7 (196-277)||(43930030-43930110)
[»] chr2 (5 HSPs)
chr2 (198-264)||(5140042-5140108)
chr2 (204-280)||(864178-864254)
chr2 (196-264)||(6951739-6951808)
chr2 (182-275)||(16011989-16012082)
chr2 (196-264)||(37285185-37285253)
[»] chr6 (2 HSPs)
chr6 (196-277)||(7447636-7447716)
chr6 (197-277)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 1718023 - 1717433
Alignment:
Q  1 acaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718023 acaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaaaa 1717924  T
Q  101 tttattcatatattcctgaaacagaatgttaagaacactctcttactaacacnnnnnnnaacatttaccctcgtattagatgaaatccatataaatctca 200  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||||| ||       |||| | || |||||||||||||||||| ||||  ||||||    
T  1717923 tttattcatatattcctcaggcagaatgttaagaacactctcttactaatactttttctaacactcactctcgtattagatgaaatctatatggatctca 1717824  T
Q  201 ccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgtacatggcattcctccttaga 300  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||| ||||| |||||||||    
T  1717823 ccactttatgtatgatccatttccaatatttgatatccacatgaatttcactaaataagaaagtggacgttagagaatgtacatagcatttctccttaga 1717724  T
Q  301 cagaatgctaggaacactcttactagaactttctctaagattcactctccttatttaaaactttgttaaccaattgaattacctactcgaagctgatttc 400  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  1717723 cagaatgctaggaacactcttactggcactttctctaagattcactctccttatttaaaactttgttaaccaaatgaattacctactcgaaactgatttc 1717624  T
Q  401 tttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  1717623 tttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaatgagccactaggtgtcaatctagatagctt 1717524  T
Q  501 gaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtcaaatccattggccacaggttct 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1717523 gaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtcaaatccattggccacagattct 1717433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 357 - 586
Target Start/End: Complemental strand, 1739164 - 1738935
Alignment:
Q  357 aaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggagga 456  Q
    ||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  1739164 aaaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatgaattgaacttgtttacagatataataatagaaaaagtttaggagga 1739065  T
Q  457 atagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactt 556  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  1739064 atagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatactt 1738965  T
Q  557 atgtgatcatgtcaaatccattggccacag 586  Q
    |||||||||||||||| |||||||||||||    
T  1738964 atgtgatcatgtcaaacccattggccacag 1738935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 393 - 580
Target Start/End: Complemental strand, 1754300 - 1754112
Alignment:
Q  393 ctgatttcttt-atacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatct 491  Q
    ||||||||||| |||| ||||||||| ||||  |||| ||  || |||||  ||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  1754300 ctgatttctttgatacttgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatct 1754201  T
Q  492 agatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtcaaatccattgg 580  Q
    ||||||||| ||||| ||||||| ||| ||||||||||  |||||||||||||  |||||| |||||||||| |||||||| |||||||    
T  1754200 agatagcctcaagaaatattacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtcaaacccattgg 1754112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 444 - 580
Target Start/End: Complemental strand, 1748932 - 1748796
Alignment:
Q  444 aagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatac 543  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||| ||||||| || ||||||||||| |||||| ||||||    
T  1748932 aagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagtattacaaggcagcttatgatgctgtgagaaaatac 1748833  T
Q  544 atcccaaatacttatgtgatcatgtcaaatccattgg 580  Q
    | |||| |  |||||||||||||||||||||||||||    
T  1748832 aacccagaggcttatgtgatcatgtcaaatccattgg 1748796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1739493 - 1739395
Alignment:
Q  1 acaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaaa 99  Q
    ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  1739493 acaagagatggatatacagaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaaaggttatgtatctatatatctaaa 1739395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1749342 - 1749254
Alignment:
Q  1 acaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatcta 89  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||||||  |||| || || ||||||||| ||||||||||||||||    
T  1749342 acaagagatggatatacagaatggggtgattcttacatacctcagacagtagctgtgattgatttcttagcacaaaggttttgtatcta 1749254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 1754957 - 1754877
Alignment:
Q  1 acaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttt 81  Q
    ||||||||||||| || |||||||||| | |||||||| ||||||||||||||||||||||| ||| ||||||||||||||    
T  1754957 acaagagatggatttatagaatggggtgaatcatacatacctcagacagtctctgtcatagatttcctagcaaaaaggttt 1754877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 46893416 - 46893497
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||| | |||||||||||   ||||||||||    
T  46893416 tctcaccactttatgtgggatccatttccaatgtgtgttacccacatgaatttcatttaataagagagtgagtgttagagag 46893497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 13639513 - 13639459
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 250  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||    
T  13639513 tctcaccactttatgtgagatccatttccaatgtgtgatacccacatgaatttca 13639459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 277
Target Start/End: Original strand, 54186928 - 54187080
Alignment:
Q  125 aatgttaagaacactctcttactaacacnnnnnnnaacatttaccctcgtattagatgaaatccatataaatctcaccactttatgtgtgatccatttcc 224  Q
    |||| ||||||||||||||| |||||||       |||||| || ||| |||| | |||||  ||| | |||||||||| |||||||| ||||||||||     
T  54186928 aatgctaagaacactctctttctaacactctctctaacattcactctcctattgggtgaaactcatgtgaatctcaccattttatgtgggatccatttct 54187027  T
Q  225 aatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    ||| | || || ||||||||| |||||  |||||||||||   ||||||||||    
T  54187028 aatgtgtggtacccacatgaacttcacccaataagagagtgagtgttagagag 54187080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 29235758 - 29235677
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    ||||||||||||||||  |||||||||| ||| | || ||||| ||||||||||||  |||||||||||   ||||||||||    
T  29235758 tctcaccactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgttagagag 29235677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 48543213 - 48543281
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 264  Q
    |||||||| |||||||| | |||||||||||| | || || |||||||||||||||  |||||||||||    
T  48543213 tctcaccattttatgtggggtccatttccaatgtatgctacccacatgaatttcacccaataagagagt 48543281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 20909363 - 20909432
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagta 265  Q
    ||||||||||||||||| ||||||||| |||||  || |  |||| ||||||||||  ||||||||||||    
T  20909363 tctcaccactttatgtgggatccattttcaataggtggtgcccacctgaatttcacccaataagagagta 20909432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 54140844 - 54140812
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaata 228  Q
    ||||||||||||||||| |||||||||||||||    
T  54140844 tctcaccactttatgtgggatccatttccaata 54140812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 30085447 - 30085529
Alignment:
Q  195 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    |||||||||||||||||| ||||||||||||| || ||| |  ||||||||||||||| ||||||||||||  ||||||||||    
T  30085447 atctcaccactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgttagagag 30085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 33440574 - 33440655
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||| ||||||  |||||||||||  |||||||||||    
T  33440574 tctcaccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatgttagagag 33440655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 28700664 - 28700583
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    ||||||||||||||||| ||| |||||||||||| || || |||||| ||||| ||  |||||||||||   ||||||||||    
T  28700664 tctcaccactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtgagtgttagagag 28700583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 6580939 - 6580862
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttaga 274  Q
    ||||||||||||||||| |||| ||||||||| | || || |||||||||||||||  |||||||| ||  ||||||||    
T  6580939 tctcaccactttatgtgggatc-atttccaatgtgtggtacccacatgaatttcacccaataagagggtgaatgttaga 6580862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 31703822 - 31703872
Alignment:
Q  198 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaattt 248  Q
    ||||||||||||||| |||||||||||||  | |||||||||||| |||||    
T  31703822 tcaccactttatgtgggatccatttccaaagtgtgatatccacattaattt 31703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 16895335 - 16895271
Alignment:
Q  213 tgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    |||||||||| |||||| || ||||||||||||||| | | |||||||||||   ||||||||||    
T  16895335 tgatccattttcaatatgtggtatccacatgaatttgattcaataagagagtgagtgttagagag 16895271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 195 - 280
Target Start/End: Original strand, 51475233 - 51475318
Alignment:
Q  195 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 280  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||  ||||||||||| | |||||||||||||    
T  51475233 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaataagagagtgggtgttagagagtgt 51475318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 31699549 - 31699617
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 264  Q
    |||||||| |||||||| | |||||||||||| | ||||| |||||||||||||||  |||||||||||    
T  31699549 tctcaccattttatgtggggtccatttccaatgtatgatacccacatgaatttcacccaataagagagt 31699617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 37306476 - 37306540
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataaga 260  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||||  |||||||    
T  37306476 tctcaccactttatgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaga 37306540  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 6540335 - 6540258
Alignment:
Q  195 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgtta 272  Q
    ||||||||||||| |||  |||||||||||||| | ||||| ||||||  |||||||  ||||||||||| |||||||    
T  6540335 atctcaccactttgtgtaggatccatttccaatgtatgataaccacattgatttcacccaataagagagtggatgtta 6540258  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 43480353 - 43480299
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 250  Q
    ||||||||||||||||| ||||||||| |||| | || || ||||||||||||||    
T  43480353 tctcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttca 43480299  T

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Target: scaffold0922 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 776 - 709
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagag 263  Q
    ||||||||||||||||| ||||||||| |||| | || ||||||||||||||||||| ||||||||||    
T  776 tctcaccactttatgtgggatccattttcaatgtgtggtatccacatgaatttcactcaataagagag 709  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 41020248 - 41020332
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 280  Q
    ||||||||||||||||| ||| |||||||||||| || || ||||||  |||||||  ||||||||||| | |||||||||||||    
T  41020248 tctcaccactttatgtgggattcatttccaatatgtggtacccacatatatttcacccaataagagagtgggtgttagagagtgt 41020332  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 42958549 - 42958487
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataa 258  Q
    ||||||||||||||||| ||||||||||||||   || || ||||||||||||||| ||||||    
T  42958549 tctcaccactttatgtgggatccatttccaatgcgtggtacccacatgaatttcaccaaataa 42958487  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 5990589 - 5990657
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 264  Q
    |||||||| |||||||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  5990589 tctcaccattttatgtgggatccatttccaatgtatggtacccacatgaatttcacccaataaaagagt 5990657  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 18237206 - 18237274
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 264  Q
    ||||||||||||||||| |||| |||| |||| | ||||| |||||||||||||||  ||||| |||||    
T  18237206 tctcaccactttatgtgggatctattttcaatgtgtgatacccacatgaatttcacccaataaaagagt 18237274  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 30892218 - 30892150
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 264  Q
    |||||||| |||||||| |||||||||| ||| | || || ||||||||| |||||  |||||||||||    
T  30892218 tctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcaccgaataagagagt 30892150  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 32153763 - 32153831
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 264  Q
    ||||||||||||||||| |||||||||||||  | ||  |||||||||  ||||||  |||||||||||    
T  32153763 tctcaccactttatgtgggatccatttccaaagtgtgggatccacatgggtttcacccaataagagagt 32153831  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 34320913 - 34320985
Alignment:
Q  179 gatgaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 251  Q
    |||||||||||| | | ||||||||||||||||| |||| |||| |||  | || |||||||||| |||||||    
T  34320913 gatgaaatccatgtgagtctcaccactttatgtgggatctattttcaaagtatggtatccacatggatttcac 34320985  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 932090 - 932035
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 251  Q
    ||||||||||||||||| |||||||||||||| | || ||||||||||||||||||    
T  932090 tctcaccactttatgtgggatccatttccaatgtgtggtatccacatgaatttcac 932035  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 11709656 - 11709729
Alignment:
Q  204 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    ||||||||| |||||||||||||| | || || |||||||||||||||| |||||||||||   ||||||||||    
T  11709656 ctttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgttagagag 11709729  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 19079022 - 19078941
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19079022 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19078941  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 19126910 - 19126829
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19126910 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19126829  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 14562603 - 14562669
Alignment:
Q  198 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 264  Q
    ||||||||||||||| |||||||||||||  | || || | |||| ||||||||| |||||||||||    
T  14562603 tcaccactttatgtgggatccatttccaaagtgtggtacctacataaatttcactcaataagagagt 14562669  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 17878792 - 17878710
Alignment:
Q  195 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    |||||||||||||||||| |||| ||||| ||| | ||||| |||||||| ||||||  |||||||||||| |||||| ||||    
T  17878792 atctcaccactttatgtgggatctatttctaatgtgtgatacccacatgactttcacccaataagagagtaaatgttaaagag 17878710  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 557447 - 557515
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 264  Q
    ||||||||||||||||| |||||||||  ||| | ||||| ||||||||||||||   |||||||||||    
T  557447 tctcaccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagt 557515  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 47822091 - 47822035
Alignment:
Q  195 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 251  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||    
T  47822091 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcac 47822035  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 43930030 - 43930110
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    |||||||||||||| |||||||||||| |||| | || || |||||||||||||||  ||||| |||||   ||||||||||    
T  43930030 tctcaccactttat-tgtgatccattttcaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttagagag 43930110  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 5140042 - 5140108
Alignment:
Q  198 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 264  Q
    ||||||||||||||| ||||||||| |||| | || || |||||||||||||||| |||||||||||    
T  5140042 tcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcactcaataagagagt 5140108  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 864178 - 864254
Alignment:
Q  204 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 280  Q
    ||||||||| |||||||||| ||| | || || |||||||||||||||  |||||||||||   |||||||||||||    
T  864178 ctttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagtgt 864254  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 6951808 - 6951739
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaa-tttcactaaataagagagt 264  Q
    ||||||||||||||||| ||||||||| |||| | ||  | ||||||||| ||||||| |||||||||||    
T  6951808 tctcaccactttatgtgggatccattttcaatgtgtggcacccacatgaattttcactcaataagagagt 6951739  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 16011989 - 16012082
Alignment:
Q  182 gaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagag 275  Q
    |||||| ||||  ||||||||||||||||| | ||| |||||||| || |  |||||||||| |||| | | ||||||| ||||| ||||||||    
T  16011989 gaaatctatatggatctcaccactttatgtttaatctatttccaaaatgtagtatccacatgtattttattcaataagaaagtaggtgttagag 16012082  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 37285185 - 37285253
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 264  Q
    ||||| ||||||| ||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  37285185 tctcatcactttacgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaaagagt 37285253  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 7447636 - 7447716
Alignment:
Q  196 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    ||||||||||||||||| |||||||||| ||| | || || |||||||||||||||  || |||||||| ||||||||||||    
T  7447636 tctcaccactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagt-gatgttagagag 7447716  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 32439586 - 32439506
Alignment:
Q  197 ctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 277  Q
    |||||| ||||||||| |||||||||||||| | || || |||||||||||||||  |||||||||||   ||||||||||    
T  32439586 ctcaccgctttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagag 32439506  T

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