View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12461_high_3 (Length: 410)
Name: NF12461_high_3
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12461_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 41090303 - 41089903
Alignment:
| Q |
9 |
agcagagagtttggcagccgaggatcgaaatcccaaatgaatgttgctggtattcataaacaaaaacatgtgtagtctatagatctgccaattcaatgca |
108 |
Q |
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| T |
41090303 |
agcaaagagtttggcagccgaggatcgaaatcccaaatgaatgttgctgctattcataaacaaaaacatgtgtagtctatagatctgcgaattcaatgca |
41090204 |
T |
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| Q |
109 |
gctaggaagaagtcagcaaaacaatgaatatatatgccaaaaatggtttcttggccttatctctccttccacatccttgtcattgatctggaagggatta |
208 |
Q |
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| T |
41090203 |
gctaggaagaagtcagcaaaacaatgaatatatatgccaaaaatggtttcttggccttatctctccttccacatccttgtcattgatctggaagggatta |
41090104 |
T |
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| Q |
209 |
atttaaag------------cattgtttataaatcattcatatttccaagtatttttagacgttgatcaaatggaaacaccctaccacatatgccaacat |
296 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
41090103 |
atttaaagcattttcataagcattgtttataaatcattcatatttcgaagtatttttagacgttgagcaaatagaaacaccctaccacatatgccaacat |
41090004 |
T |
|
| Q |
297 |
aaatgtgatcgttaacatttattc--nnnnnnnnnnnnngtgattgtgaccaagaggaagctatttttagcaaaagagaaaactatttttacgttattga |
394 |
Q |
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| T |
41090003 |
aaatgtgatcgttaacatttattcaaaaaaaaaaaaaaagtgattgtgaccaagaggaagctatttttagcaaaagagaaaactatttttacgttattga |
41089904 |
T |
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| Q |
395 |
t |
395 |
Q |
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| T |
41089903 |
t |
41089903 |
T |
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