View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12461_high_5 (Length: 346)
Name: NF12461_high_5
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12461_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 5103128 - 5102820
Alignment:
| Q |
18 |
gtgaggggaaagctgataatgtaactgattctaggtttattgctgttgatcgaaatcgccgtggaaatcgtgacgactcggcgattaaccgccgtggagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5103128 |
gtgaggggaaagctgataatgtaactgattctaggtttattgctgttgatcgaaatccccgtggtaatcgtgacgactcggcgattaaccgccgtggagt |
5103029 |
T |
|
| Q |
118 |
tgttgtggtgtctgaagagaatcggaaacctatgaccggagatggaatcgctgacaatgcaaccgtttctaggtctaatcgttctggtcgtaatcgcggc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5103028 |
tgttgtggtgtctgaagagaatcggaaacctatgaccggagatggaatcgctgacaatgcaaccgtttctaggtctaatcgttctggtcgtaatcgccgc |
5102929 |
T |
|
| Q |
218 |
ggaaatcttaagggtttggtagagaatcgtcgtgaaaacggtgtggagaatgaagacaggcggaaatcggtgaccggagctggaatcggaggtggaagcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5102928 |
ggaaatcttaagggtttggtagagaatcgtcgtgaaaacggtgtggagaatgaagacaggcggaaatcggtgaccggagctggaatcggaggtggaagcg |
5102829 |
T |
|
| Q |
318 |
ccggtcatg |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
5102828 |
ccggtcatg |
5102820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University