View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12461_low_11 (Length: 305)

Name: NF12461_low_11
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12461_low_11
NF12461_low_11
[»] chr1 (16 HSPs)
chr1 (18-288)||(48179339-48179609)
chr1 (75-283)||(47873854-47874062)
chr1 (76-236)||(40140972-40141136)
chr1 (96-230)||(2417749-2417886)
chr1 (83-232)||(40027189-40027337)
chr1 (75-232)||(49287413-49287567)
chr1 (86-290)||(33860546-33860750)
chr1 (86-290)||(33920173-33920377)
chr1 (95-230)||(37847219-37847359)
chr1 (86-286)||(45196748-45196954)
chr1 (77-293)||(49440278-49440494)
chr1 (70-152)||(41186128-41186210)
chr1 (161-286)||(49540497-49540622)
chr1 (103-176)||(49540418-49540491)
chr1 (254-287)||(40027131-40027164)
chr1 (166-230)||(37850074-37850138)
[»] chr3 (3 HSPs)
chr3 (84-287)||(14964282-14964485)
chr3 (85-151)||(540434-540500)
chr3 (83-151)||(485609-485677)
[»] chr7 (1 HSPs)
chr7 (95-236)||(32347364-32347505)
[»] chr5 (2 HSPs)
chr5 (93-236)||(31266823-31266969)
chr5 (111-152)||(1204363-1204404)
[»] chr6 (3 HSPs)
chr6 (88-151)||(34606051-34606114)
chr6 (88-151)||(34727328-34727391)
chr6 (88-151)||(33465645-33465708)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 48179609 - 48179339
Alignment:
Q  18 cacagagaccacaagttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataat 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179609 cacagagaccacaggttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataat 48179510  T
Q  118 ctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179509 ctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatc 48179410  T
Q  218 tcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccaca 288  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179409 tcctgaatacacactgcatactgcagataaaataccgatgacatacacagagtttctctcatatccccaca 48179339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 75 - 283
Target Start/End: Complemental strand, 47874062 - 47873854
Alignment:
Q  75 taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat 174  Q
    ||||||| ||||||||| ||||||||||||||| ||||| |||| || |||||| || |||| |||||||| |||||  ||||  |||||  || |||||    
T  47874062 taacacgatgtacaatatgcaagttactcaactggagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccat 47873963  T
Q  175 gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttct 274  Q
    || |||||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||  | |||| ||  || |||| ||||||||||||| ||    
T  47873962 gaggagctggaagcgtaatgcatttttacaattttttatcatcccctgaatacactctacatagtgtagatgaagaactgatggcatacacagagttgct 47873863  T
Q  275 ctcatatcc 283  Q
    |||||||||    
T  47873862 ctcatatcc 47873854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 40141136 - 40140972
Alignment:
Q  76 aacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat- 174  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||     
T  40141136 aacacggtgtacaacatgcaagttactcaactagagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccata 40141037  T
Q  175 --gaagagctggaagcgtaatgcatttttgcaa-ttttttatcatctcctgaatacacactgcat 236  Q
      || ||||||||| ||| || |||||||| || |||||||||||| ||||||||||||||||||    
T  40141036 aggaggagctggaaacgtgatacatttttgtaatttttttatcatcgcctgaatacacactgcat 40140972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 230
Target Start/End: Original strand, 2417749 - 2417886
Alignment:
Q  96 agttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat---gaagagctggaagcgtaa 192  Q
    ||||||||||||  |||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||   || ||||||||||||||     
T  2417749 agttactcaactgaagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccatacggaggagctggaagcgtac 2417848  T
Q  193 tgcatttttgcaattttttatcatctcctgaatacaca 230  Q
    | ||||||||||||||||||||||| ||||||||||||    
T  2417849 tacatttttgcaattttttatcatcccctgaatacaca 2417886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 40027337 - 40027189
Alignment:
Q  83 tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagct 182  Q
    ||||||||| |||||||||||||| |||||||||||||| ||| || || || | |||||||| |||||  |||||   |||  |||||||||| |||||    
T  40027337 tgtacaatatgcaagttactcaacaagagaataatctacctca-atcgtagaggtctaaaacatcaatccaacatgctagaaaatgttccatgaggagct 40027239  T
Q  183 ggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacact 232  Q
    ||||||||||| |||||||| ||||||||| |||| ||||||||||||||    
T  40027238 ggaagcgtaatacatttttgtaattttttaccatcccctgaatacacact 40027189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 49287567 - 49287413
Alignment:
Q  75 taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat 174  Q
    ||||||| |||| ||||  ||||| |||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||  |||||| ||||  || | |||    
T  49287567 taacacggtgtataatatccaagtcactcaactagggaataatctacctcatattgtagatgtctaaatcaccaatcaaacatgtaggaatgtgctgcat 49287468  T
Q  175 gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacact 232  Q
       ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||||||    
T  49287467 ---gagctggaagcataatgcattttttcaattttttatcatccccgaaatacacact 49287413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 290
Target Start/End: Complemental strand, 33860750 - 33860546
Alignment:
Q  86 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga 185  Q
    |||||| ||| | |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || |    
T  33860750 acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa 33860651  T
Q  186 agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc 285  Q
    | |||||| ||||||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| |||||||||||||    
T  33860650 accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33860551  T
Q  286 acagg 290  Q
    |||||    
T  33860550 acagg 33860546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 290
Target Start/End: Original strand, 33920173 - 33920377
Alignment:
Q  86 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga 185  Q
    |||||| ||| | |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || |    
T  33920173 acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa 33920272  T
Q  186 agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc 285  Q
    | |||||| ||||||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| |||||||||||||    
T  33920273 accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33920372  T
Q  286 acagg 290  Q
    |||||    
T  33920373 acagg 33920377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 230
Target Start/End: Complemental strand, 37847359 - 37847219
Alignment:
Q  95 aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg 194  Q
    |||||||||||||||| ||||||||||||||||| ||  ||| ||||| ||||||||  || ||||| | ||||||||||| | | || |||||||||||    
T  37847359 aagttactcaactagaaaataatctacttcatatcgtacatgtctaaatcaccaatcaaacttgtggaatcttgttccatggaaacctagaagcgtaatg 37847260  T
Q  195 cattttt-----gcaattttttatcatctcctgaatacaca 230  Q
    |||||||      |||||| |||||||||||||||||||||    
T  37847259 catttttttttctcaatttgttatcatctcctgaatacaca 37847219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 86 - 286
Target Start/End: Complemental strand, 45196954 - 45196748
Alignment:
Q  86 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg-- 183  Q
    |||||| |||||||||| |||||||||||||||||  |||||||||||||| ||||||||||||||| ||||     |  ||||| ||| | ||||||      
T  45196954 acaatatgcaagttacttaactagagaataatctatctcatattgttgatgtctaaaacaccaatcgaacatcaaacacattgttgcatcaggagctgga 45196855  T
Q  184 ----gaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcat 279  Q
        |||| ||||||| ||||||||||||||||||||  ||||||||| |||| ||||  | |||||||| |  |||| |||||| ||| || | |||||    
T  45196854 actagaagtgtaatgcttttttgcaattttttatcattccctgaatacgcactacatattgtagataaaagattgatgtcatacatagaattgcactcat 45196755  T
Q  280 atcccca 286  Q
    |||||||    
T  45196754 atcccca 45196748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 293
Target Start/End: Original strand, 49440278 - 49440494
Alignment:
Q  77 acacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga 176  Q
    |||| |||| ||||| |||||||||| ||| ||||||||||||||||||| | || |||| ||||||||||||||| |||||  | | | |||  |||||    
T  49440278 acacattgtgcaatatgcaagttactaaaccagagaataatctacttcatgtcgtagatgtctaaaacaccaatcgaacatggagaagcctgtatcatga 49440377  T
Q  177 agagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctct 276  Q
     ||  ||||||||| ||| | |||||  |||||||||| || | ||||||||   | |||   | |||||||| || ||||||||| ||||| || ||||    
T  49440378 ggatttggaagcgtgatgtacttttgtgattttttatcgtcccatgaatacatgatacatgttgtagataaaacactgatgacataaacagaattactct 49440477  T
Q  277 catatccccacaggttc 293  Q
    |||||||||||| ||||    
T  49440478 catatccccacatgttc 49440494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 41186210 - 41186128
Alignment:
Q  70 aaaaataacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcg 152  Q
    |||| ||||||  ||||||||| |||||||||||||||||| |||||||||  ||||||||| |||||||||| |||||||||    
T  41186210 aaaagtaacacaatgtacaatatgcaagttactcaactagaaaataatctatctcatattgtagatgcctaaaccaccaatcg 41186128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 286
Target Start/End: Original strand, 49540497 - 49540622
Alignment:
Q  161 ggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgaca 260  Q
    |||||||||| ||||| |||||||||   ||||| ||||||| || ||||||||||| |||||||||||||| ||||  | ||||  || || |||||||    
T  49540497 ggaacttgtttcatgaggagctggaattttaatgtatttttgaaactttttatcatcacctgaatacacactacatattgtagatccaagacggatgaca 49540596  T
Q  261 tacacagagtttctctcatatcccca 286  Q
    |||| |||||| ||||| ||||||||    
T  49540597 tacatagagttgctctcgtatcccca 49540622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 49540418 - 49540491
Alignment:
Q  103 caactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga 176  Q
    ||||||||||||||||||| |||||| || |||  |||||||| |||||  |||||  ||||||||||||||||    
T  49540418 caactagagaataatctacctcatatcgtagatttctaaaacaacaatccaacatgaaggaacttgttccatga 49540491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 40027164 - 40027131
Alignment:
Q  254 gatgacatacacagagtttctctcatatccccac 287  Q
    |||||||||||||||||| |||||||||||||||    
T  40027164 gatgacatacacagagttactctcatatccccac 40027131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 37850138 - 37850074
Alignment:
Q  166 ttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacaca 230  Q
    |||||||||| | || ||||| |||||||||||||| |||||| |||||||  ||||||| ||||    
T  37850138 ttgttccatggaaagttggaaacgtaatgcatttttacaatttgttatcattccctgaatgcaca 37850074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 84 - 287
Target Start/End: Complemental strand, 14964485 - 14964282
Alignment:
Q  84 gtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg 183  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||   |||   | | |||||| |||   ||||||    
T  14964485 gtacaatatgcaaattactcaactagagaataatctacttcatattgtagatgtctaaaacaccaatctaccatcaagcaccttgttgcatctggagctg 14964386  T
Q  184 gaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcc 283  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||| ||||  | |||||||| || |||||||||||||||||| || ||||||||    
T  14964385 gaagcgtaatgcatttttgcaattgtttatcatccccagaatacacactacatattgtagataaaagactgatgacatacacagagttgctttcatatcc 14964286  T
Q  284 ccac 287  Q
    ||||    
T  14964285 ccac 14964282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 540434 - 540500
Alignment:
Q  85 tacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 151  Q
    |||||||| || |||||||| ||||||||||||| || ||||||||||||||  |||| ||||||||    
T  540434 tacaataaccatgttactcatctagagaataatccacctcatattgttgatgtttaaagcaccaatc 540500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 485609 - 485677
Alignment:
Q  83 tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 151  Q
    |||||||||| || |||||||| || ||||| |||| || |||||||||||||| ||||| ||||||||    
T  485609 tgtacaataaccatgttactcatctggagaaaaatccacctcatattgttgatgtctaaagcaccaatc 485677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 95 - 236
Target Start/End: Original strand, 32347364 - 32347505
Alignment:
Q  95 aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg 194  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||||||||||||| || || |||| ||| |||||| | ||||||||||| |||||    
T  32347364 aagttattcaactagagaataatctacttcagattgtagatgtctaaaacaccaatcgaacttgagggatctttttccataaggagctggaagcataatg 32347463  T
Q  195 catttttgcaattttttatcatctcctgaatacacactgcat 236  Q
    |||||||||||| |||||||||| |||||||| |||| ||||    
T  32347464 catttttgcaatcttttatcatcccctgaatagacacggcat 32347505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 31266969 - 31266823
Alignment:
Q  93 gcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaa 192  Q
    |||| |||||||||||||||||||||||||||| || || |||  |||||| || | ||| || |   ||||||||||| || | ||| |||||| ||||    
T  31266969 gcaaattactcaactagagaataatctacttcagatcgtagatttctaaaatactagtcgaacttaaaggaacttgttctattaggagttggaagtgtaa 31266870  T
Q  193 tgcatttttgcaatt---ttttatcatctcctgaatacacactgcat 236  Q
    |||||||||||||||   |||||||||| |||||||| ||| |||||    
T  31266869 tgcatttttgcaattttattttatcatcccctgaatagacattgcat 31266823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 1204363 - 1204404
Alignment:
Q  111 gaataatctacttcatattgttgatgcctaaaacaccaatcg 152  Q
    ||||||||||| ||||| |||||||| |||||||||||||||    
T  1204363 gaataatctacctcatagtgttgatgtctaaaacaccaatcg 1204404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 34606114 - 34606051
Alignment:
Q  88 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 151  Q
    |||||||| | |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34606114 aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34606051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 34727391 - 34727328
Alignment:
Q  88 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 151  Q
    |||||||| | |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34727391 aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 33465645 - 33465708
Alignment:
Q  88 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 151  Q
    |||||||| | |||||||  |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  33465645 aataagcatgctactcaaaaagagtataatctacctcatattgtagatgtctaaaacaccaatc 33465708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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