View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12461_low_14 (Length: 287)
Name: NF12461_low_14
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12461_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 32243433 - 32243155
Alignment:
| Q |
1 |
ccacaccatttccacaagtgtagttattcagtggacaaaatctctcgtatctgtgaacatggccccaaagggcaagggacacattgttattcaccaacag |
100 |
Q |
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| T |
32243433 |
ccacaccatttccacaagtgtagttattcagtggacaaaatctctcgtatctatgaacatggccccaaagggcaagggacacattgttattcaccaatag |
32243334 |
T |
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| Q |
101 |
aggttccaagtgctccaacatctgttctcttaacagaacatccttggttccattaattgttgtgtacataggtcggtgcccttggacaactacaaaagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
32243333 |
aggttccaagtgctccaacatctgttctcttaacagaacatccttggttccgttgattgtggtgtacataggtcggtgcccttggactactacaaaagga |
32243234 |
T |
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| Q |
201 |
gtcttgttcctatcaactgattccagatcatgcttcaagaagttatattggttgctcccaagaagaaaattggtctctg |
279 |
Q |
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| T |
32243233 |
gtcttgttcctgtcaactgattccaaatcatgcttcaagaagttatactggttgctcccaagaagaaaattggtctctg |
32243155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 32248514 - 32248236
Alignment:
| Q |
1 |
ccacaccatttccacaagtgtagttattcagtggacaaaatctctcgtatctgtgaacatggccccaaagggcaagggacacattgttattcaccaacag |
100 |
Q |
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||||||||||||||||||| |||| || |||||||||||||||||||| || |||||||| |||||||||||||||| |||| |||||||||||| || |
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| T |
32248514 |
ccacaccatttccacaagtaaagttgtttagtggacaaaatctctcgtacctatgaacatgaccccaaagggcaagggttacatggttattcaccaatag |
32248415 |
T |
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| Q |
101 |
aggttccaagtgctccaacatctgttctcttaacagaacatccttggttccattaattgttgtgtacataggtcggtgcccttggacaactacaaaagga |
200 |
Q |
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| T |
32248414 |
aggttccaggtgctcaaccatctttcctcttaacgcagcatccctaaattcattgcttgttgtgtacatgggtcggtgcccttggactactacaaaagga |
32248315 |
T |
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| Q |
201 |
gtcttgttcctatcaactgattccagatcatgcttcaagaagttatattggttgctcccaagaagaaaattggtctctg |
279 |
Q |
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||||||||||| ||||||||||||| |||| |||| ||||||||||| || ||||||||| |||| ||||||||||||| |
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| T |
32248314 |
gtcttgttcctgtcaactgattccaaatcacgctttaagaagttatactgattgctcccaggaaggaaattggtctctg |
32248236 |
T |
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