View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12461_low_17 (Length: 236)

Name: NF12461_low_17
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12461_low_17
NF12461_low_17
[»] chr6 (15 HSPs)
chr6 (5-222)||(17690442-17690659)
chr6 (5-222)||(27297647-27297864)
chr6 (5-222)||(29309878-29310095)
chr6 (5-222)||(29316837-29317054)
chr6 (5-222)||(27380229-27380446)
chr6 (5-222)||(27470612-27470829)
chr6 (5-222)||(17683459-17683677)
chr6 (5-222)||(11652686-11652903)
chr6 (5-170)||(27278407-27278572)
chr6 (5-170)||(27303298-27303463)
chr6 (5-194)||(18336605-18336794)
chr6 (131-222)||(25536292-25536383)
chr6 (30-135)||(28755282-28755386)
chr6 (30-62)||(16393506-16393538)
chr6 (86-161)||(16393546-16393621)
[»] chr1 (10 HSPs)
chr1 (5-222)||(18253018-18253235)
chr1 (9-222)||(18531519-18531733)
chr1 (5-222)||(27309555-27309772)
chr1 (5-222)||(9075879-9076096)
chr1 (5-222)||(16358035-16358254)
chr1 (61-222)||(27130442-27130603)
chr1 (5-94)||(21169411-21169500)
chr1 (8-166)||(22640856-22641014)
chr1 (153-222)||(36815747-36815816)
chr1 (157-190)||(27276691-27276724)
[»] scaffold0061 (1 HSPs)
scaffold0061 (5-222)||(5198-5415)
[»] scaffold0433 (1 HSPs)
scaffold0433 (5-222)||(8096-8313)
[»] scaffold0390 (2 HSPs)
scaffold0390 (5-222)||(5911-6128)
scaffold0390 (5-222)||(12927-13144)
[»] chr4 (25 HSPs)
chr4 (5-222)||(8859180-8859397)
chr4 (3-222)||(18263200-18263419)
chr4 (3-222)||(18270061-18270280)
chr4 (5-222)||(26971453-26971670)
chr4 (5-222)||(19919508-19919725)
chr4 (5-222)||(19925737-19925954)
chr4 (5-222)||(869609-869826)
chr4 (5-222)||(28392144-28392361)
chr4 (17-222)||(4425629-4425834)
chr4 (5-222)||(55613697-55613913)
chr4 (5-222)||(5714960-5715178)
chr4 (5-222)||(5708325-5708542)
chr4 (5-222)||(10620310-10620527)
chr4 (5-222)||(10627392-10627609)
chr4 (5-191)||(26964590-26964776)
chr4 (5-222)||(47387932-47388149)
chr4 (131-218)||(8846195-8846282)
chr4 (30-161)||(35224601-35224732)
chr4 (9-148)||(10676570-10676709)
chr4 (9-148)||(10890210-10890349)
chr4 (133-222)||(5667198-5667287)
chr4 (9-79)||(20579418-20579488)
chr4 (5-67)||(10825329-10825391)
chr4 (81-148)||(10690356-10690423)
chr4 (81-148)||(10903996-10904063)
[»] scaffold0234 (2 HSPs)
scaffold0234 (3-222)||(1319-1538)
scaffold0234 (3-222)||(10212-10431)
[»] chr8 (9 HSPs)
chr8 (5-222)||(22172473-22172690)
chr8 (5-222)||(6095134-6095351)
chr8 (5-222)||(21941653-21941872)
chr8 (5-222)||(15327211-15327428)
chr8 (5-222)||(15507580-15507797)
chr8 (55-222)||(28549035-28549203)
chr8 (5-166)||(24643993-24644153)
chr8 (55-194)||(29230430-29230568)
chr8 (55-191)||(24796039-24796170)
[»] chr7 (13 HSPs)
chr7 (5-222)||(29328776-29328993)
chr7 (5-222)||(12751847-12752064)
chr7 (5-222)||(11535064-11535281)
chr7 (5-222)||(11541982-11542199)
chr7 (5-214)||(12739538-12739747)
chr7 (5-222)||(18562021-18562238)
chr7 (5-205)||(2652990-2653190)
chr7 (5-222)||(15153456-15153672)
chr7 (5-201)||(9978837-9979033)
chr7 (122-202)||(11557192-11557272)
chr7 (163-220)||(24850719-24850776)
chr7 (28-82)||(18256843-18256897)
chr7 (155-190)||(13393182-13393217)
[»] chr3 (25 HSPs)
chr3 (5-222)||(10571568-10571785)
chr3 (5-222)||(10578334-10578551)
chr3 (5-222)||(15341221-15341438)
chr3 (5-222)||(15356588-15356805)
chr3 (5-222)||(15599886-15600103)
chr3 (5-222)||(15606431-15606648)
chr3 (5-205)||(6111105-6111305)
chr3 (5-222)||(16481460-16481676)
chr3 (3-222)||(17196748-17196967)
chr3 (6-222)||(13517797-13518013)
chr3 (5-222)||(18537983-18538200)
chr3 (17-222)||(32056059-32056264)
chr3 (5-179)||(13212331-13212505)
chr3 (5-222)||(1646498-1646715)
chr3 (5-166)||(8491428-8491589)
chr3 (9-194)||(16201236-16201420)
chr3 (8-166)||(23014348-23014505)
chr3 (84-222)||(17137367-17137505)
chr3 (128-222)||(17780243-17780337)
chr3 (128-222)||(19081544-19081638)
chr3 (9-94)||(13258661-13258746)
chr3 (5-86)||(17780165-17780246)
chr3 (5-86)||(19081466-19081547)
chr3 (11-161)||(25801243-25801392)
chr3 (35-99)||(54333200-54333264)
[»] chr5 (7 HSPs)
chr5 (5-222)||(24694462-24694677)
chr5 (17-222)||(19713514-19713719)
chr5 (5-222)||(24701231-24701441)
chr5 (5-222)||(18565459-18565680)
chr5 (61-220)||(19706230-19706389)
chr5 (30-194)||(938577-938740)
chr5 (7-86)||(39539653-39539732)
[»] chr2 (5 HSPs)
chr2 (5-214)||(22790835-22791044)
chr2 (5-189)||(41664787-41664970)
chr2 (135-222)||(21329374-21329461)
chr2 (58-215)||(18620830-18620988)
chr2 (30-135)||(27353433-27353538)
[»] scaffold1199 (1 HSPs)
scaffold1199 (5-222)||(108-330)
[»] scaffold0220 (1 HSPs)
scaffold0220 (17-222)||(19300-19506)
[»] scaffold0063 (1 HSPs)
scaffold0063 (5-194)||(6544-6733)
[»] scaffold0008 (1 HSPs)
scaffold0008 (5-194)||(229389-229578)
[»] scaffold0213 (1 HSPs)
scaffold0213 (5-137)||(4313-4445)
[»] scaffold1303 (1 HSPs)
scaffold1303 (8-166)||(986-1143)
[»] scaffold0026 (1 HSPs)
scaffold0026 (5-147)||(26276-26418)
[»] scaffold0032 (1 HSPs)
scaffold0032 (5-222)||(107249-107467)
[»] scaffold0203 (1 HSPs)
scaffold0203 (5-121)||(29186-29302)
[»] scaffold0502 (1 HSPs)
scaffold0502 (9-194)||(62-247)
[»] scaffold0657 (1 HSPs)
scaffold0657 (5-57)||(3870-3922)
[»] scaffold0039 (1 HSPs)
scaffold0039 (5-93)||(87829-87916)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 17690442 - 17690659
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690442 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 17690541  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690542 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 17690641  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  17690642 tagtaatgcttcaacaca 17690659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 27297864 - 27297647
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27297864 gagcagaacctttgtagaagaaatatttctaatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 27297765  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27297764 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 27297665  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  27297664 tagtaatgcttcaacaca 27297647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 29310095 - 29309878
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29310095 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagctatgcctctactcagtccacacgaacagaacttctccgatgaccggt 29309996  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29309995 gctagccaattccaacggagattcagagataacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaagt 29309896  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  29309895 tagtaatgcttcaacaca 29309878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 29317054 - 29316837
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29317054 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagctatgcctctactcagtccacacgaacagaacttctccgatgaccggt 29316955  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29316954 gctagccaattccaacagagattcagagataacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaagt 29316855  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  29316854 tagtaatgcttcaacaca 29316837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 27380229 - 27380446
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27380229 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctctgatgaccggt 27380328  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  27380329 gctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaggt 27380428  T
Q  205 tagtaatgcttcaacaca 222  Q
    || ||||| |||||||||    
T  27380429 taataatgtttcaacaca 27380446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 27470612 - 27470829
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27470612 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctctgatgaccggt 27470711  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  27470712 gctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaggt 27470811  T
Q  205 tagtaatgcttcaacaca 222  Q
    || ||||| |||||||||    
T  27470812 taataatgtttcaacaca 27470829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 17683459 - 17683677
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17683459 gagcagaacctttgtagcagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctctgatgaccggt 17683558  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa-g 203  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| |    
T  17683559 gctagccaattccaacggagattcaaagagaacaatgtttagagagcggtgactagggtttcacaacttttgtgaattaagttaagcactcacaaaaagg 17683658  T
Q  204 ttagtaatgcttcaacaca 222  Q
    |||||||||||||||||||    
T  17683659 ttagtaatgcttcaacaca 17683677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 11652903 - 11652686
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||    
T  11652903 gagcagaacctttgtagaagaaatatttctgatcacgagtaaagcaaagcagcgatgcctctactcagtccacacaaactgtacttctctgatgaccggt 11652804  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||||||||| |||| ||||||||| |    
T  11652803 gctagccaattccaacggagattcagaaagaagaaggtttagagagcggcatctagggtttcacaacttttgtgaattaggttcagcattcacaaaaaat 11652704  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  11652703 tagtaatgcttcaacaca 11652686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 27278572 - 27278407
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27278572 gagcagaacctttgtagaagaaatatttctaatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 27278473  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaa 170  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27278472 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaa 27278407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 27303463 - 27303298
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27303463 gagcagaacctttgtagaagaaatatttctaatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 27303364  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaa 170  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27303363 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaa 27303298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 18336794 - 18336605
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| | |||| ||||||||||| ||||||||||   ||||||| |||||||||||||||||||||| ||||||||  ||||| |||    
T  18336794 gagcagaacctttgtagcataaatgtttctgatcacaagcaaagcaacatagcgatgtctctactcagtccacacgaacataacttctctaatgactggt 18336695  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcact 194  Q
    ||||||||| | ||||| |||| ||||||||||||||||||||||||||| | ||  ||||||| |||||| |||||||||| |||||||    
T  18336694 gctagccaacttcaacggagatccagagagaacaaggtttagagagcggcagatattgtttcaccacttttatgaattaggtaaagcact 18336605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 25536292 - 25536383
Alignment:
Q  131 agagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacaca 222  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25536292 agagaacaaggtttagagagcggcggcttgggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacaca 25536383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 28755282 - 28755386
Alignment:
Q  30 tttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattca 129  Q
    |||||||||||||||||| ||||| ||| ||| |||||||||||||||||||| ||||||| ||  |||| |||||||||||||||||||||||| || |    
T  28755282 tttctgatcacgagcaaatcaaagtagcaatgtctctactcagtccacacgaatagaactt-tctaatgatcggtgctagccaattccaacgaaggttga 28755380  T
Q  130 gagaga 135  Q
    ||||||    
T  28755381 gagaga 28755386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 16393506 - 16393538
Alignment:
Q  30 tttctgatcacgagcaaagcaaagcagcgatgc 62  Q
    |||||||||||||||||||||||| ||||||||    
T  16393506 tttctgatcacgagcaaagcaaagtagcgatgc 16393538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 16393546 - 16393621
Alignment:
Q  86 aacttctccgatgaccggtgctagccaattccaa-cgaagattcagagagaacaaggtttagagagcggcggctagg 161  Q
    |||||||| ||||||| || |||||||||| ||| || |||||||||||||    ||||||||||||||||||||||    
T  16393546 aacttctctgatgaccagtactagccaatttcaaacggagattcagagagattg-ggtttagagagcggcggctagg 16393621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 18253235 - 18253018
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18253235 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 18253136  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18253135 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 18253036  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  18253035 tagtaatgcttcaacaca 18253018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 18531519 - 18531733
Alignment:
Q  9 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgcta 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18531519 agaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctacttagtccacacgaacagaacttctccgatgaccggtgcta 18531618  T
Q  109 gccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa-gttag 207  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  18531619 gccaattccaacggagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaaggttcg 18531718  T
Q  208 taatgcttcaacaca 222  Q
    |||||||||||||||    
T  18531719 taatgcttcaacaca 18531733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 27309555 - 27309772
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  27309555 gagcaaaacctttgtagaagaaatatttctgatcacgagcaaagcaaagtagcgatgcctctactcagtccacacgaaaagaacctctccgatgaccggt 27309654  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27309655 gctagccaatttcaacggagattcaaagagaacaaggtttagagagcggcggctagggtttcacaacttttgttaattaggttaagcactcacaaaaagt 27309754  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  27309755 tagtaatgcttcaacaca 27309772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 9075879 - 9076096
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    |||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||| |||| ||||    
T  9075879 gagcagaatctttgtagaagaattatttctgatcacgagcaaagcaaagcagcgttgcctctactcattccacatgaacagaacgtctcctatgatcggt 9075978  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9075979 gctagccaattccaacggagattcaaagagaacgaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 9076078  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  9076079 tagtaatgcttcaacaca 9076096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 16358035 - 16358254
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacga-gcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgg 103  Q
    ||||||||||| |||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  16358035 gagcagaacctttgtagaagaaatatttatgatcacgaagaaaagaaaagcagcgatgcctctactcagtccacaagaacagaacttctccgaagaccgg 16358134  T
Q  104 tgctag-ccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa 202  Q
    || ||| ||||||||||||  |||||| ||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||    
T  16358135 tgatagaccaattccaacggggattcaaagagaacaacgtttagagagcgacagctatggtttcacaacttttgtgaattaggttaagcactcacaaaaa 16358234  T
Q  203 gttagtaatgcttcaacaca 222  Q
    ||||||||||||||||||||    
T  16358235 gttagtaatgcttcaacaca 16358254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 27130442 - 27130603
Alignment:
Q  61 gcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctag 160  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  27130442 gcctctactcagtccacacgaacagaacttctccgaagaccggtgctagccaattccaacggagattcagagagaacaaggtttagagagcggaggctag 27130541  T
Q  161 ggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacaca 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27130542 ggtttcacaacttttgtgaattaggttaagcacttacaaaaagttagtaatgcttcaacaca 27130603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 21169411 - 21169500
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctcc 94  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21169411 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcaacgatgcctctactcagtccacacgaacagaacttctcc 21169500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 22640856 - 22641014
Alignment:
Q  8 cagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgct 107  Q
    |||||||| ||||| |||| | |||||||||||||||||||||| | |||||||||||||||| ||||| |||  |||||||||||  |||||  |||||    
T  22640856 cagaacctttgtagcagaattgtttctgatcacgagcaaagcaacgtagcgatgcctctactctgtccagacgttcagaacttctcttatgactagtgct 22640955  T
Q  108 agccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttc 166  Q
    |||||||||||||  ||||||||||||||   ||||| |||||||||||||||||||||    
T  22640956 agccaattccaacagagattcagagagaatggggttttgagagcggcggctagggtttc 22641014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 36815747 - 36815816
Alignment:
Q  153 gcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacaca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||  || |||||||||||||    
T  36815747 gcggctagggtttcacaacttttgtgaattaggttaagcactcacaagaagtctgtcatgcttcaacaca 36815816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 27276691 - 27276724
Alignment:
Q  157 ctagggtttcacaacttttgtgaattaggttaag 190  Q
    ||||||||||||||||||||||||||||||||||    
T  27276691 ctagggtttcacaacttttgtgaattaggttaag 27276724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 5198 - 5415
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 5297  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5298 gctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 5397  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  5398 tagtaatgcttcaacaca 5415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 8313 - 8096
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8313 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 8214  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8213 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 8114  T
Q  205 tagtaatgcttcaacaca 222  Q
    |||||||| |||||||||    
T  8113 tagtaatgtttcaacaca 8096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 5911 - 6128
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5911 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 6010  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 6110  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  6111 tagtaatgcttcaacaca 6128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 12927 - 13144
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12927 gagcagaacctttgtagcagaaatctttctcatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 13026  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13027 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaactgttgtgaattaggttaagcactcacaaaaagt 13126  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  13127 tagtaatgcttcaacaca 13144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 8859397 - 8859180
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859397 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 8859298  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859297 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 8859198  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  8859197 tagtaatgcttcaacaca 8859180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 18263419 - 18263200
Alignment:
Q  3 acgagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccg 102  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18263419 acgagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttatccgatgaccg 18263320  T
Q  103 gtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa 202  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18263319 gtgctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa 18263220  T
Q  203 gttagtaatgcttcaacaca 222  Q
    |||||| ||| |||||||||    
T  18263219 gttagtcatgtttcaacaca 18263200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 18270280 - 18270061
Alignment:
Q  3 acgagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccg 102  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18270280 acgagcagaacctttatagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccg 18270181  T
Q  103 gtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa 202  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18270180 gtgctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa 18270081  T
Q  203 gttagtaatgcttcaacaca 222  Q
    |||||| ||| |||||||||    
T  18270080 gttagtcatgtttcaacaca 18270061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 26971670 - 26971453
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26971670 gagcagaacctttgtagcataaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 26971571  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26971570 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 26971471  T
Q  205 tagtaatgcttcaacaca 222  Q
    |||||||| |||||||||    
T  26971470 tagtaatgtttcaacaca 26971453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 19919508 - 19919725
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19919508 gagcacaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 19919607  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19919608 gctagccaatttcaacggagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagg 19919707  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  19919708 tagtaatgcttcaacaca 19919725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 19925737 - 19925954
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19925737 gagcacaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcaatgcctctactcagtccacacgaacagaacttctccgatgaccggt 19925836  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19925837 gctagccaattccaacggagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagg 19925936  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  19925937 tagtaatgcttcaacaca 19925954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 869826 - 869609
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  869826 gagcagaacatttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 869727  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  869726 gctagccaattccaacggagattcagagagaactatgtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggt 869627  T
Q  205 tagtaatgcttcaacaca 222  Q
    |||||||| |||||||||    
T  869626 tagtaatgtttcaacaca 869609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 28392144 - 28392361
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  28392144 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagtacttctccgatgactggt 28392243  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28392244 gctagccaattccaacggagattcagagagaagaaggtttaaagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 28392343  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  28392344 tagtaatgcttcaacaca 28392361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 4425629 - 4425834
Alignment:
Q  17 tgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattc 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4425629 tgtagaagaaatatttctaatcacgagcaaagcaaagcagcgatgcctctacttagtccacacgaacagaacttctccgatgaccggtgctagccaattc 4425728  T
Q  117 caacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttc 216  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4425729 caacggagattcaaagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcacttacaaaaagttagtaatgcttc 4425828  T
Q  217 aacaca 222  Q
    ||||||    
T  4425829 aacaca 4425834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 55613913 - 55613697
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  55613913 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgactggt 55613814  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  55613813 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggct-gagtttcacaacttttgtgaattaggttaagcactcacaaaaagt 55613715  T
Q  205 tagtaatgcttcaacaca 222  Q
     |||||||||||||||||    
T  55613714 aagtaatgcttcaacaca 55613697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 5715178 - 5714960
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5715178 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccagt 5715079  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactc-acaaaaag 203  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  5715078 gctagccaattccaacggagattcagagagaactacgtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaacaaaagg 5714979  T
Q  204 ttagtaatgcttcaacaca 222  Q
    ||||||||| |||||||||    
T  5714978 ttagtaatgtttcaacaca 5714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 5708542 - 5708325
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    |||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5708542 gagcagaatctttgtataagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 5708443  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5708442 gctagccaattccaacggagattcagagagaactacgtttagagagcagcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggt 5708343  T
Q  205 tagtaatgcttcaacaca 222  Q
    |||||||| |||||||||    
T  5708342 tagtaatgtttcaacaca 5708325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 10620310 - 10620527
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10620310 gagcagaacctctgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctattcagtccacacgaacagaacttctccgatgaccggt 10620409  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10620410 gctagccaattccaacagagattcagagagaacaaggtttagagagcgacggctagggtttcacaacttttgtgaattaggtcaagcactcacaaaaagt 10620509  T
Q  205 tagtaatgcttcaacaca 222  Q
     |||||||||||||||||    
T  10620510 cagtaatgcttcaacaca 10620527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 10627392 - 10627609
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10627392 gagcagaacctctgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctattcagtccacacgaacagaacttctccgatgaccggt 10627491  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10627492 gctagccaattccaatggagattcagagagaacaaggtttagagagcgacggctagggtttcacaacttttgtgaattaggtcaagcactcacaaaaagt 10627591  T
Q  205 tagtaatgcttcaacaca 222  Q
     |||||||||||||||||    
T  10627592 cagtaatgcttcaacaca 10627609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 26964776 - 26964590
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26964776 gagcagaacctttgtagcataaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 26964677  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagc 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26964676 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagc 26964590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 47387932 - 47388149
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| | || | ||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47387932 gagcagaacctttgtagcataattgtttctgatcacgagcaaagcaacatagcgatgcctctacttagtccacacgaacagaacttctccgatgaccggt 47388031  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||  ||||||    
T  47388032 gctagccaattccaacggagattcagtgagaaaaaggtttagagagtggcggctagggtttcacgccttttgtgaattaggttaagcactcaacaaaagt 47388131  T
Q  205 tagtaatgcttcaacaca 222  Q
     ||||||| |||| ||||    
T  47388132 cagtaatgtttcagcaca 47388149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 8846282 - 8846195
Alignment:
Q  131 agagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaa 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8846282 agagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaa 8846195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 35224732 - 35224601
Alignment:
Q  30 tttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattca 129  Q
    ||||||||||||||||||||||   | |||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||| | |||||    
T  35224732 tttctgatcacgagcaaagcaagatatcgatgcctctactcagtccacacgaacagagcttcttcgatgacccgtgctagtcaattccaacggatattca 35224633  T
Q  130 gagagaacaaggtttagagagcggcggctagg 161  Q
    || |||| | ||||||||||| ||||||||||    
T  35224632 gaaagaatagggtttagagagaggcggctagg 35224601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 10676570 - 10676709
Alignment:
Q  9 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgcta 108  Q
    ||||||| ||||| | || | ||||||||||||||||||| || | ||||||||||||| | ||||||||| |||||||||||||||||||||||| |||    
T  10676570 agaacctttgtagcataattgtttctgatcacgagcaaagtaacgtagcgatgcctctatttagtccacacaaacagaacttctccgatgaccggttcta 10676669  T
Q  109 gccaattccaacgaagattcagagagaacaaggtttagag 148  Q
    |||||| |||||  |||||||||||||| | |||||||||    
T  10676670 gccaataccaacagagattcagagagaatagggtttagag 10676709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 10890210 - 10890349
Alignment:
Q  9 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgcta 108  Q
    ||||||| ||||| | || | ||||||||||||||||||| || | ||||||||||||| | ||||||||| |||||||||||||||||||||||| |||    
T  10890210 agaacctttgtagcataattgtttctgatcacgagcaaagtaacgtagcgatgcctctatttagtccacacaaacagaacttctccgatgaccggttcta 10890309  T
Q  109 gccaattccaacgaagattcagagagaacaaggtttagag 148  Q
    |||||| |||||  |||||||||||||| | |||||||||    
T  10890310 gccaataccaacagagattcagagagaatagggtttagag 10890349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 5667198 - 5667287
Alignment:
Q  133 agaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacaca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  ||||||||||| ||||    
T  5667198 agaacaaggtttagagagcggcggctagggtttcacaacttttgtgaataaggttaagcactcacaaaaaatatgtaatgcttcagcaca 5667287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 20579418 - 20579488
Alignment:
Q  9 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacac 79  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20579418 agaacctttgtagaagaaataattctgatcacgagcaaagcaaagcagcgatgcctctattcagtccacac 20579488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 10825329 - 10825391
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctcta 67  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  10825329 gagcagaacctctgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctcta 10825391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 10690423 - 10690356
Alignment:
Q  81 aacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaggtttagag 148  Q
    |||||||||||||||||||||| ||||||||||| |||||  |||||||||||||| | |||||||||    
T  10690423 aacagaacttctccgatgaccgatgctagccaataccaacagagattcagagagaatagggtttagag 10690356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 10904063 - 10903996
Alignment:
Q  81 aacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaggtttagag 148  Q
    |||||||||||||||||||||| ||||||||||| |||||  |||||||||||||| | |||||||||    
T  10904063 aacagaacttctccgatgaccgatgctagccaataccaacagagattcagagagaatagggtttagag 10903996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 1319 - 1538
Alignment:
Q  3 acgagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccg 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1319 acgagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccg 1418  T
Q  103 gtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa 202  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1419 gtgctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa 1518  T
Q  203 gttagtaatgcttcaacaca 222  Q
    |||||| ||| |||||||||    
T  1519 gttagtcatgtttcaacaca 1538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 10212 - 10431
Alignment:
Q  3 acgagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccg 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10212 acgagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccg 10311  T
Q  103 gtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa 202  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10312 gtgctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa 10411  T
Q  203 gttagtaatgcttcaacaca 222  Q
    |||||| ||| |||||||||    
T  10412 gttagtcatgtttcaacaca 10431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 22172690 - 22172473
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22172690 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccagt 22172591  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  22172590 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaagat 22172491  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  22172490 tagtaatgcttcaacaca 22172473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 6095351 - 6095134
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6095351 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaaacagcgatgcctctactcagtccacacgaacaaaacttctccgatgaccggt 6095252  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6095251 gctagccaattccaatgaagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 6095152  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  6095151 tagtaatgcttcaacaca 6095134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 21941872 - 21941653
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21941872 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccagt 21941773  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa-- 202  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  21941772 gctagctaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagg 21941673  T
Q  203 gttagtaatgcttcaacaca 222  Q
    ||||||||||||||||||||    
T  21941672 gttagtaatgcttcaacaca 21941653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 15327428 - 15327211
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  15327428 gagctgaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacatgaacataaattctccgatgaccggt 15327329  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15327328 gctagccaattccaacggagattcaaagagaacaagttttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggt 15327229  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  15327228 tagtaatgcttcaacaca 15327211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 15507797 - 15507580
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  15507797 gagctgaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacatgaacataaattctccgatgaccggt 15507698  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15507697 gctagccaattccaacggagattcaaagagaacaagttttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggt 15507598  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  15507597 tagtaatgcttcaacaca 15507580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 28549203 - 28549035
Alignment:
Q  55 agcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggc 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  28549203 agcgatgcctctactcagtccacacgaacagaacttctccgatgaccagtgctagccaattccaacagagattcagagagaaccaggtttagagagcggc 28549104  T
Q  155 ggctagggtttcacaac-ttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacaca 222  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  28549103 ggctagggtttcacaactttttgtgaattaggttaagcactcacaaaatgttagtcatgcttcaacaca 28549035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 24644153 - 24643993
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24644153 gagcagaacctttgtataacaaatatttctgatcacgagcaaagcagagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgat 24644054  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttc 166  Q
    ||||||||||| ||||| |||||||||||| || ||||||||||||| |||||| |||||||    
T  24644053 gctagccaattacaacggagattcagagag-actaggtttagagagcagcggctggggtttc 24643993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 29230568 - 29230430
Alignment:
Q  55 agcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggc 154  Q
    ||||||||||||||| |||||||||||| |||||||||| ||| || | | |||||||||||||||| ||||| |||||||||||||||||  |||||||    
T  29230568 agcgatgcctctacttagtccacacgaaaagaacttctctgataacag-tactagccaattccaacggagattaagagagaacaaggtttaaggagcggc 29230470  T
Q  155 ggctagggtttcacaacttttgtgaattaggttaagcact 194  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  29230469 ggctagggtttcacaacttttgttagttaggttaagcact 29230430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 24796039 - 24796170
Alignment:
Q  55 agcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggc 154  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| || || ||| ||||||||||||    
T  24796039 agcgatgcctctactgagtccac-cgaacagaacttctccgatgaccggtgctagctaatttcaacgaagattcagaaag-actaggattagagagcggc 24796136  T
Q  155 ggctagggtttcacaacttttgtgaattaggttaagc 191  Q
    | |||||  || | ||| |||||||||||||||||||    
T  24796137 gtctagg--tttataac-tttgtgaattaggttaagc 24796170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 29328993 - 29328776
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||    
T  29328993 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagttcacacgaacataacttctctgatgaccggt 29328894  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29328893 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 29328794  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  29328793 tagtaatgcttcaacaca 29328776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 12752064 - 12751847
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12752064 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactccgtccacacgaacagaacttctccgatgaccggt 12751965  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||    
T  12751964 gctagccaattccaacggagatttagagagaacaaggtttagagagcggcggctacggtttcacaacttttgtaaatgaggttaagcactcacaaaaagt 12751865  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  12751864 tagtaatgcttcaacaca 12751847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 11535064 - 11535281
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  11535064 gagcagaacctttgtagtagaaatctttctgatcacgagcaaagcaaagcagcgatgtctctactcagtccacacgaacagaacttctccgatgatcggt 11535163  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11535164 gctagccaattccaacgaagattaagagagaacaaggtttagagagcggtggctagggtttcacaacttttgtgaattaggttaagcactaacaaaaagt 11535263  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  11535264 tagtaatgcttcaacaca 11535281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 11541982 - 11542199
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  11541982 gagcagaacctttgtagtagaaatctttctgatcacgagcaaagcaaagcagcgatacctctactcagtccacacgaacagaacttctccggtgatcggt 11542081  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11542082 gctagccaattccaacgaagattaagagagaacaaggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 11542181  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  11542182 tagtaatgcttcaacaca 11542199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 12739747 - 12739538
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  12739747 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacaaaaacagaacttctccgatgaccggt 12739648  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12739647 gctagccaattccaacggagattaagagagaacaaggtttagagagcggcggctacggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 12739548  T
Q  205 tagtaatgct 214  Q
    ||||||||||    
T  12739547 tagtaatgct 12739538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 18562238 - 18562021
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||| ||||| ||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  18562238 gagcagaacctttgtagtagaattatttttgatcacgagcaaagcaaaacagcgatgcctctacttagtctacacgaacataacttctccgatgaccggt 18562139  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18562138 gctagccaattccaacggagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggtttagcactcacaaaaagt 18562039  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||| ||||||||||    
T  18562038 tagtaatacttcaacaca 18562021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 2652990 - 2653190
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2652990 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgactggt 2653089  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2653090 gctagccaattccaacagagaatcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcataaaaagt 2653189  T
Q  205 t 205  Q
    |    
T  2653190 t 2653190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 15153672 - 15153456
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15153672 gagcagaacctttgtagaa-aaatatttctgatcacgagcaaagcaaagaagcgatgcctctactcagtccacacgaacaaaacttctccgatgaccggt 15153574  T
Q  105 gctagccaattccaacgaagattcagagagaac-aaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaag 203  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  15153573 gctagccaattccaacggagattcagagagaacaaatgtttagagagcggcggcta-ggtttcacaacttttgtgaatgaggtttagcactcacaaaaag 15153475  T
Q  204 ttagtaatgcttcaacaca 222  Q
    || ||||||||||||||||    
T  15153474 tttgtaatgcttcaacaca 15153456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 9979033 - 9978837
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  9979033 gagcagaacctttgtagtagaactatttctgatcacgagcaaagcaaaatagcgatgcctctacttagtccacacgaacagaactttttcgatgaccggt 9978934  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaa 201  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9978933 gctagccaattccaacgaagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgcgaattaggttaagcactcacaaaa 9978837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 11557192 - 11557272
Alignment:
Q  122 aagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11557192 aagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaa 11557272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 24850719 - 24850776
Alignment:
Q  163 tttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaaca 220  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  24850719 tttcacaacttttgtgaattaggttaagcactcccaaaaagttcgtaatgcttcaaca 24850776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 18256843 - 18256897
Alignment:
Q  28 tatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaa 82  Q
    |||||||||||||||||||||||| | |||||| ||| |||| ||||||||||||    
T  18256843 tatttctgatcacgagcaaagcaacgtagcgatacctatacttagtccacacgaa 18256897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 13393217 - 13393182
Alignment:
Q  155 ggctagggtttcacaacttttgtgaattaggttaag 190  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13393217 ggctagggtttcacaacttttgtaaattaggttaag 13393182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 10571568 - 10571785
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10571568 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 10571667  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10571668 gctagtcaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 10571767  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  10571768 tagtaatgcttcaacaca 10571785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 10578334 - 10578551
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578334 gagcagaacctttgtagcagaaatttttctgatcacgagcaaaacaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 10578433  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578434 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 10578533  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  10578534 tagtaatgcttcaacaca 10578551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 15341221 - 15341438
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  15341221 gagcagaacctttgtagaaaaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacatgaacagaacttctccgatgatcggt 15341320  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15341321 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 15341420  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  15341421 tagtaatgcttcaacaca 15341438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 15356588 - 15356805
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15356588 gagcagaacctttgtagaaaaaatatttctgatcatgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgatcggt 15356687  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15356688 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 15356787  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  15356788 tagtaatgcttcaacaca 15356805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 15599886 - 15600103
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15599886 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 15599985  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15599986 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 15600085  T
Q  205 tagtaatgcttcaacaca 222  Q
    |||||||| |||||||||    
T  15600086 tagtaatgtttcaacaca 15600103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 15606431 - 15606648
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15606431 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttcttcgatgaccggt 15606530  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15606531 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 15606630  T
Q  205 tagtaatgcttcaacaca 222  Q
    |||||||| |||||||||    
T  15606631 tagtaatgtttcaacaca 15606648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 6111305 - 6111105
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6111305 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 6111206  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6111205 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 6111106  T
Q  205 t 205  Q
    |    
T  6111105 t 6111105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 16481460 - 16481676
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16481460 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgactggt 16481559  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  16481560 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggct-gagtttcacaacttttgtgaattaggttaagcactcacaaaaagt 16481658  T
Q  205 tagtaatgcttcaacaca 222  Q
     |||||||||||||||||    
T  16481659 aagtaatgcttcaacaca 16481676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 17196748 - 17196967
Alignment:
Q  3 acgagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccg 102  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  17196748 acgagcagaacctttgtagaagaaatatttctgatcacgagtaaagcaaaacagtgatgcttctactcagtccacacgaacagaacttctccgatgaccg 17196847  T
Q  103 gtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaa 202  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||    
T  17196848 gtgctagccaattccaacggagattcaaagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaagttaagcacaaacaaaaa 17196947  T
Q  203 gttagtaatgcttcaacaca 222  Q
    ||||||||||||||||||||    
T  17196948 gttagtaatgcttcaacaca 17196967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 13518013 - 13517797
Alignment:
Q  6 agcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtg 105  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  13518013 agcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacataacttctctgatgaccggtg 13517914  T
Q  106 ctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagtt 205  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||    
T  13517913 ctagccaattccaacggagattcaaagagaacaatgtttagagagcggcggctagggtttcacaacttttgtgaattaggtttagcactcacattaagtt 13517814  T
Q  206 agtaatgcttcaacaca 222  Q
    ||| |||||||||||||    
T  13517813 agtcatgcttcaacaca 13517797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 18538200 - 18537983
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18538200 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 18538101  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18538100 gctagccaattcaaacggagattcagagagaccaaggtttagagagcgacggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggt 18538001  T
Q  205 tagtaatgcttcaacaca 222  Q
    |  |||||||||| ||||    
T  18538000 tcataatgcttcagcaca 18537983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 32056059 - 32056264
Alignment:
Q  17 tgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattc 116  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||     
T  32056059 tgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcggtccacacgaacagaacttctctgatgaccggtgctagccaattt 32056158  T
Q  117 caacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttc 216  Q
    ||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  32056159 caacggaaattcagagagaacaaggtttagagagcggcggctagggcttcacaacttttgtgaattaggttaagcaatcacaaaaagttagtaatgcttg 32056258  T
Q  217 aacaca 222  Q
    ||||||    
T  32056259 aacaca 32056264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 13212505 - 13212331
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13212505 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaaaacttctccgatgaccggt 13212406  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtga 179  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13212405 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtga 13212331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 1646498 - 1646715
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  1646498 gagcagaacctttgtagaataaatatttctaatcacgagcaaagcaaagtagcgatacctctacttagtccacacgaacagaacttctccgatgaccggt 1646597  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    || ||||||||| |||| ||||||| |||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| |    
T  1646598 gcaagccaattctaacggagattcaaagagaacaaggtttagagagcgacgactagggtttcacaacttttgttaattaggttaagcactcacaaaaaat 1646697  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  1646698 tagtaatgcttcaacaca 1646715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 8491589 - 8491428
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8491589 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgatcggt 8491490  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttc 166  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8491489 gctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttc 8491428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 16201420 - 16201236
Alignment:
Q  9 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgcta 108  Q
    ||||||| ||||| | |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |    
T  16201420 agaacctttgtagcataaatgtttctgatcacgagaaaagcaaagcagtgatgcctctactcagtccacacgaacagaacttatccgatgaccagtgcaa 16201321  T
Q  109 gccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcact 194  Q
    ||||||||||||  | ||| |||| | || || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16201320 gccaattccaacagaaatttagagcg-actagctttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcact 16201236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 23014348 - 23014505
Alignment:
Q  8 cagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgct 107  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||     
T  23014348 cagaacctttgtataagaaatatttatgatcacgagcaaagcaaagcggcgatgtctctactcagtccacacgaacagaacttctccgatgatcggtgca 23014447  T
Q  108 agccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttc 166  Q
    |||||||||||||  |||||||||||| || ||||||||||||||||||||||||||||    
T  23014448 agccaattccaacagagattcagagag-actaggtttagagagcggcggctagggtttc 23014505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 17137505 - 17137367
Alignment:
Q  84 agaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaatta 183  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||| |||  |||| |||||||||||||||| |||||    
T  17137505 agaacttctccgatgactggtgctagccaattccaacggagattcaaagagaacaaagtttagagagaggcaactagtgtttcacaacttttgttaatta 17137406  T
Q  184 ggttaagcactcacaaaaagttagtaatgcttcaacaca 222  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17137405 ggttaagcactcacaaaaagttagtaatgcttcaacaca 17137367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 17780243 - 17780337
Alignment:
Q  128 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacaca 222  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17780243 cagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacaca 17780337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 19081544 - 19081638
Alignment:
Q  128 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacaca 222  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19081544 cagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacaca 19081638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 13258746 - 13258661
Alignment:
Q  9 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctcc 94  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13258746 agaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaaaacttctcc 13258661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 17780165 - 17780246
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaga 86  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17780165 gagcagaacctttgtagaagaaatatttctgatcacgagcaaaccaaagcagcgatgcctctactcagtccacacgaacaga 17780246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 19081466 - 19081547
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaga 86  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19081466 gagcagaacctttgtagaagaaatatttctgatcacgagcaaaccaaagcagcgatgcctctactcagtccacacgaacaga 19081547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 25801392 - 25801243
Alignment:
Q  11 aacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagc 110  Q
    ||||| ||||| |||| | |||||||| ||||||||||||| | ||||| |||||||| ||||||||||||||| ||||| |||| |||  ||||||||     
T  25801392 aacctttgtagcagaattgtttctgattacgagcaaagcaatgtagcgacgcctctacccagtccacacgaacataacttatccggtga-tggtgctagg 25801294  T
Q  111 caattccaacgaagattcagagagaacaaggtttagagagcggcggctagg 161  Q
    ||||| ||||| |||||||||||||| | |||||||||||| ||| |||||    
T  25801293 caatttcaacggagattcagagagaatagggtttagagagcagcgactagg 25801243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 54333200 - 54333264
Alignment:
Q  35 gatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatga 99  Q
    ||||||||||||| ||||| | ||||| |||||||||||| ||||||||||| |||||| |||||    
T  54333200 gatcacgagcaaaacaaagtaacgatgtctctactcagtctacacgaacagaccttctctgatga 54333264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 24694462 - 24694677
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694462 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 24694561  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  24694562 gctagccaattccaacggagattcagagagaacgaggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagca--cccaaaaagt 24694659  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  24694660 tagtaatgcttcaacaca 24694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 19713514 - 19713719
Alignment:
Q  17 tgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattc 116  Q
    ||||| |||| ||||||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||    
T  19713514 tgtagtagaattatttctgatcacgagcaaagcaaaacaacgatgcctctacttagtccacatgaacagaacttctccgatgactggtgctagccaattc 19713613  T
Q  117 caacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttc 216  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  19713614 caacggagattcagagagaaaaaggtttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcactaaaagttagttatgcttc 19713713  T
Q  217 aacaca 222  Q
    ||||||    
T  19713714 aacaca 19713719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 24701231 - 24701441
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| ||||||||||||||||     |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24701231 gagcagaacctttgtagcagaaatctttctgatcacgagca-----aagcagcgatgcctctactcagtccacacgaatagaacttctccgatgaccggt 24701325  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  24701326 gctagccaattccaacggagattcagagagaacgaggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagca--cccaaaaagt 24701423  T
Q  205 tagtaatgcttcaacaca 222  Q
    ||||||||||||||||||    
T  24701424 tagtaatgcttcaacaca 24701441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 18565459 - 18565680
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcga--tgcctctactcagtccacacgaacagaacttctccgatg--ac 100  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||| |||||||| ||||  ||    
T  18565459 gagcagaacctttgtagaa-aaatatttctgatcacgagcaaagcaaagcagcgagatgcctctactcagtccacacaaacaaaacttctctgatgtgac 18565557  T
Q  101 cggtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcac-aa 199  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18565558 cggtgctagccaattccaacggagattcaaatagaacaaggtttagagaccggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaa 18565657  T
Q  200 aaagttagtaatgcttcaacaca 222  Q
    |||||| ||||||||||||||||    
T  18565658 aaagtttgtaatgcttcaacaca 18565680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 61 - 220
Target Start/End: Original strand, 19706230 - 19706389
Alignment:
Q  61 gcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctag 160  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||  | ||| |||||||| |||||||||||||||||||||||    
T  19706230 gcctctacttagtccacacgaacataacttctccgatgaccggtgctagccaatttcaacagatatttagagagaagaaggtttagagagcggcggctag 19706329  T
Q  161 ggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaaca 220  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  19706330 ggtttcacaacttttgtgaattaggttaagcactcactaaaagttagttatgcttcaaca 19706389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 938577 - 938740
Alignment:
Q  30 tttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctcc---gatgaccggtgctagccaattccaacgaagat 126  Q
    |||| |||||| | |||| ||| | |||||||| |||||||| |||||||||||||||||||| |   ||||||||||||||||| ||||||||| ||||    
T  938577 tttccgatcacaaacaaaacaacgtagcgatgcttctactcaatccacacgaacagaacttctacgatgatgaccggtgctagccgattccaacggagat 938676  T
Q  127 tcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcact 194  Q
    | |||||||| ||||||||||||||||||||||||  || | ||| ||||||||||||||| ||||||    
T  938677 t-agagagaataaggtttagagagcggcggctagg--tttataac-tttgtgaattaggtttagcact 938740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 39539732 - 39539653
Alignment:
Q  7 gcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaga 86  Q
    ||||||||| ||||| ||||   ||||||||||| |||||||||| | ||||||| ||||||||||||||||| ||||||    
T  39539732 gcagaacctttgtagcagaatagtttctgatcacaagcaaagcaacgtagcgatgtctctactcagtccacacaaacaga 39539653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 22790835 - 22791044
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22790835 gagcagaacctttgtagaagaaatatttctgatgacgagcaaagcaaagaagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 22790934  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 204  Q
    ||||||||||||| ||| ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22790935 gctagccaattcccacggagattcaaagagaacaaagtatagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 22791034  T
Q  205 tagtaatgct 214  Q
    ||||||||||    
T  22791035 tagtaatgct 22791044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 41664970 - 41664787
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||| | ||||| |||| | |||||||||||||||| ||||| | |||||||| |||||| ||||||||||||||||| ||| ||||||| ||||    
T  41664970 gagcagaacatttgtagtagaattgtttctgatcacgagcatagcaacgtagcgatgcttctacttagtccacacgaacagaa-ttccccgatgatcggt 41664872  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaa 189  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  41664871 gctagccaattccaacggagattcggagagaacaaggtttagagaacgacggctagggtttcacaacttttgtgaattaggttaa 41664787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 21329374 - 21329461
Alignment:
Q  135 aacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacaca 222  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21329374 aacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacaca 21329461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 18620988 - 18620830
Alignment:
Q  58 gatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggc 157  Q
    |||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||  ||||||||| ||||||| |||||||||| |||  |    
T  18620988 gatgtctccactcagtccacacgaacagaatttctccgatgactggtgctagccaattccaacagagattcagatagaacaaagtttagagagtggcaac 18620889  T
Q  158 tagggtttcacaacttttgtgaattaggttaagcactc-acaaaaagttagtaatgctt 215  Q
    |||| ||||||||||| | ||||||||||||||   || ||||||||| ||||||||||    
T  18620888 taggatttcacaacttctttgaattaggttaagtgttcaacaaaaagtcagtaatgctt 18620830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 27353538 - 27353433
Alignment:
Q  30 tttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattca 129  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||| | |||||||||| |||||||||| | ||||||||||| || |||||||    
T  27353538 tttctgatcacgagcaaagcaacgtagcgatgcctctactcagtccacacgtagagaacttctctgatgaccggtacgagccaattccagcggagattca 27353439  T
Q  130 gagaga 135  Q
    ||||||    
T  27353438 gagaga 27353433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 330 - 108
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  330 gagcagaacctttgtagaagaaatatttctgatcacaagcaaagcaaagcagcgatgtctctactcagtccacacgaacagaacttctccgatgaccggt 231  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactca-----caa 199  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||     |||    
T  230 gctagccaattccaacggagattcagagagaacaaggtttagatagcggcggctatggtttcacaacttttgtgaattaggttaagcactcacttttcaa 131  T
Q  200 aaagttagtaatgcttcaacaca 222  Q
    ||||||  |||||||||||||||    
T  130 aaagttcataatgcttcaacaca 108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 19506 - 19300
Alignment:
Q  17 tgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  19506 tgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacatgaacagaacttctccgatgaccggtgctagccaatta 19407  T
Q  117 caacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcac-tcacaaaaagttagtaatgctt 215  Q
    ||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  19406 caacggagattcagagagaactacgtttagagagtggcggctagggtttcacaacttttgtgaattaggttaagcacttcacaaaaagttagtaatgttt 19307  T
Q  216 caacaca 222  Q
    |||||||    
T  19306 caacaca 19300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 6733 - 6544
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||| |||||| ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  6733 gagcagaacctttgtagtagaattatttcagatcacgagcaaagcaaaatagcgatgcctctacttagtccacacgaacagaacttctccgatgactggt 6634  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcact 194  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6633 gctagccaattccaatggagattcaaagagaacaaggtttagagagcggcggctagggtttcaccacttttgtgaattaggttaagcact 6544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 229389 - 229578
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||  |||| |||||||||||||||||||||||||  |||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  229389 gagcagaacctttgtactagaattatttctgatcacgagcaaagcaaaatagcgatgcctatacttagtccacatgaacagaacttctccgatgaccggt 229488  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcact 194  Q
    |||||||| || ||| | ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  229489 gctagccagtttcaatggagattcaaagagaacaaggtttagagagcggcggctagggtttcaccacttttgtgaattaggttaagcact 229578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 4445 - 4313
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4445 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 4346  T
Q  105 gctagccaattccaacgaagattcagagagaac 137  Q
    ||||||||||||||||| |||||||||||||||    
T  4345 gctagccaattccaacggagattcagagagaac 4313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 986 - 1143
Alignment:
Q  8 cagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgct 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  986 cagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgtctctactcagtccacacgaacataacttctccgatgaccggtgct 1085  T
Q  108 agccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttc 166  Q
    ||||||||||||||  ||||||||||| || | |||||||||||| ||  |||||||||    
T  1086 agccaattccaacggtgattcagagag-actaagtttagagagcgacgattagggtttc 1143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 26418 - 26276
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| | |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26418 gagcagaacctttgtagtataaatttttcttatcatgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaaaacttctccgatgaccggt 26319  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttaga 147  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  26318 gctagccaattccaacaaagattcagagagaacaaagtttaga 26276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 107249 - 107467
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||| ||||| |||||||||| | |||  |||||| |||||||||| | ||| ||||||||||  |||||| |||||||||||||||||||||||| ||    
T  107249 gagcataacctttgtagaagaattgtttacgatcacaagcaaagcaacgtagcaatgcctctacatagtccaaacgaacagaacttctccgatgaccagt 107348  T
Q  105 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactc-acaaaaag 203  Q
    |  |||||||||||||| |||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||  |||||   || |||||||     
T  107349 gtcagccaattccaacggagattcagagagaacaagatttaaagagtggcggctagggtttcacaacttttgtgaattatcttaagtgttcaacaaaaac 107448  T
Q  204 ttagtaatgcttcaacaca 222  Q
    |||||||||||||| ||||    
T  107449 ttagtaatgcttcagcaca 107467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 29186 - 29302
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 104  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29186 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatggccggt 29285  T
Q  105 gctagccaattccaacg 121  Q
    |||||||||||||||||    
T  29286 gctagccaattccaacg 29302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 247 - 62
Alignment:
Q  9 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgcta 108  Q
    ||||||| ||||| | |||| ||||| ||||| ||||||  ||   ||||||| |||||||||||||| ||||||| ||||||||  ||||| |||||||    
T  247 agaacctttgtagcaaaaatgtttctaatcacaagcaaacaaacatagcgatgtctctactcagtccatacgaacataacttctctaatgactggtgcta 148  T
Q  109 gccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcact 194  Q
    ||||| | ||||| |||| ||||||||||||||||||||||||||||| ||  ||||||| |||||| |||||||||| |||||||    
T  147 gccaacttcaacggagatccagagagaacaaggtttagagagcggcggatactgtttcaccacttttatgaattaggtaaagcact 62  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 3922 - 3870
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagc 57  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3922 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagc 3870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 87916 - 87829
Alignment:
Q  5 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctc 93  Q
    ||||||||||| ||||| | || | ||| ||||||| ||||||| |||| ||||||||||||||| |||||| ||||||| ||||||||    
T  87916 gagcagaacctttgtagtataattgtttatgatcacaagcaaagtaaagtagcgatgcctctacttagtcca-acgaacataacttctc 87829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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