View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12461_low_18 (Length: 236)
Name: NF12461_low_18
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12461_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 8448357 - 8448561
Alignment:
| Q |
19 |
ataattaccagatcacagtttttccaatttatttcctcattgcatacaattactccttttgcagaaaaatgcactcatttttctcaacagatatacaata |
118 |
Q |
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| T |
8448357 |
ataattaccagatcacagtttttccaatttatttcctcattgcatacaattactccttttgcagaaaaatgcactcatttttctcaacagatatacaata |
8448456 |
T |
|
| Q |
119 |
tacaatttaaagtcgtgacaatgttagagttttaattgttattttcttattctagtggtaatatcatacaaaacagcttgaatcccaatggaattttgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8448457 |
tacaatttaaagtcgtgacaatgttagagttttaattgatattttcttattctattggtaatatcatacaaaacagcttgaatcccaatggaattttgaa |
8448556 |
T |
|
| Q |
219 |
cacag |
223 |
Q |
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||||| |
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| T |
8448557 |
cacag |
8448561 |
T |
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