View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12461_low_19 (Length: 223)
Name: NF12461_low_19
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12461_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 14241255 - 14241070
Alignment:
| Q |
16 |
agcacagagtaagaacattatcatctacaccattagattaatgtatatattggtaaaaattaataattaattttggttatttgttatgaattatagacat |
115 |
Q |
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| T |
14241255 |
agcacagaataagagcattatcatttacaccattagattaatgtatacatttgtgaaaattaataattaattttggttatttgttatgaattatagacat |
14241156 |
T |
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| Q |
116 |
ctttaccatgcggagtataaatgtcatggacctggagccacaacagatggaagggcttcttggtcaaggcagcttagtgatgaaga |
201 |
Q |
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| T |
14241155 |
ctttaccatgcggagtataaatgtcatggacctggagccacaacacagggaagagcttcttggtcaaggcagcttagtgatgaaga |
14241070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 12957772 - 12957932
Alignment:
| Q |
44 |
accattagattaatgtatatattg---gtaaaaattaataattaattttggttatttgttatgaattatagacatctttaccatgcggagtataaatgtc |
140 |
Q |
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| T |
12957772 |
accattagattaatgtatacattgttggtgaaaaataataattaattttggttatttgttttaaactatagacatctttaccatgcggagtataaatgcc |
12957871 |
T |
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| Q |
141 |
atggacctggagccacaacagatggaagggcttcttggtcaaggcagcttagtgatgaaga |
201 |
Q |
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| T |
12957872 |
atggacctggagccatagcagagaaaagagcttcttggtcaaggcaacttagtgatgaaga |
12957932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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