View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12461_low_3 (Length: 490)
Name: NF12461_low_3
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12461_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Complemental strand, 137875 - 137413
Alignment:
| Q |
19 |
gtaagcctgcttgctacccagatgaacactaccttccaaccttcctgaatatgttccatggttcccttaattcaaacagaacagtcacatgggtcgactg |
118 |
Q |
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| T |
137875 |
gtaagcctgcttgctacccagatgaacactaccttccaaccttcctgaatatgttccatggttcccttaattcaaacagaacagtcacatgggtcgactg |
137776 |
T |
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| Q |
119 |
gtcaatgctcggtcctcatccggcaacctacgggagggacaatataactgtcggttttatacaggctataaggaacaatggatccctttgtccatataat |
218 |
Q |
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| T |
137775 |
gtcaatgctcggtcctcatccagcaacctacgggagggacaatataactgtcggttttatacaggctataaggaacaatggatccctttgtccatataat |
137676 |
T |
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| Q |
219 |
tcagatatgacttccatttgttacctctttgctcgcaagtttgatcccagtgcattggagcccttgcttgacctctcttccgaagtcatgaacttttaat |
318 |
Q |
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| T |
137675 |
tcagatatgacttccatttgttacctctttgctcgcaagtttgatcccagtgcattggagcccttgcttgacctctcttccgaagtcatgaacttttaat |
137576 |
T |
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| Q |
319 |
tttttctattcatgtatgtacaagaggtcagatgtttaactcattcttttagtcttagtccctagattttggtagaggatttcacaacttcagtaagtaa |
418 |
Q |
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| T |
137575 |
tttttctattcatgtatgtacaagaggtcagatgtttaactcattcttttagtcttagtccctagattttggtagaggatttcacaacttcagtaagtaa |
137476 |
T |
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| Q |
419 |
gaaatcatttcgcattggtagatctgtctgtacaggtattgttagagaatttgggttctctgc |
481 |
Q |
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| T |
137475 |
gaaatcatttcgcattggtagatctgtctgtacaggtattgttagagaatttgggttctctgc |
137413 |
T |
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