View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12461_low_5 (Length: 349)
Name: NF12461_low_5
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12461_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 138 - 330
Target Start/End: Original strand, 25880853 - 25881045
Alignment:
| Q |
138 |
agtccaaacaatttattataaattgtcatgtctaaatttaagcctcattaaacaaataaaaacatccaagcaatgatttttcccatacatcactcaagta |
237 |
Q |
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| T |
25880853 |
agtcaaaacaatttatca-atattgtcctgtctagatttaagcctcattaaacaaataaaaacatccaagcaatgatttttcccatacatcactcaagta |
25880951 |
T |
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| Q |
238 |
ccattcacaaacaatttagtcaaaataaagaatccgaccgaacactcttcacttctaaaatgatcatgttataa-ctaacttcactgttgagca |
330 |
Q |
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| T |
25880952 |
ccattcacaaacaatttagtcaaaataaagaatccgaccgaacactcttcacttctaaaatgatcatgttataacctaacttcactgttgagca |
25881045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 25880725 - 25880785
Alignment:
| Q |
11 |
cacagatattcaaattatataatataaaagttccttaaactttgttcagaatatataatcc |
71 |
Q |
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| T |
25880725 |
cacaaatattcagattatataatatgaaagttccttaaactttgttcggaatatataatcc |
25880785 |
T |
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