View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12461_low_8 (Length: 336)
Name: NF12461_low_8
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12461_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 33127812 - 33127539
Alignment:
| Q |
17 |
cagagatgtgacctagagaataaaccaagatcataactgacaaaccccatgttacacaaattccaggaaatgttactgttcctttagtttcttccacttt |
116 |
Q |
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| T |
33127812 |
cagagatgtgaccaagagaataaaccaagatcataactgacaaaccccatgttacacaaattccaggaaatgttactgttcctttagtttcttccacttt |
33127713 |
T |
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| Q |
117 |
attcagaacaactacgcaacaccctgcaaatattaagaagtatgttcctatcacctctgctattacctgttccatacatttaatttttaaataaaacatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127712 |
attcagaacaactacgcaacaccctgcaaatattaagaagtatgttcctatcacctctgctattacctgttccatacatttaatttttaaataaaacatt |
33127613 |
T |
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| Q |
217 |
cattagtagtgacaaagatattcaattcacaatactcaacacaataacatcaatgaaaactatatattattaat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127612 |
cattagtagtgacaaagatattcaattcacaatactcaacacaataacatcaatgaaaactatatattattaat |
33127539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 33127509 - 33127476
Alignment:
| Q |
282 |
attattaatatgtgtaccttttgtatgatttgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33127509 |
attattaatatgtgtaccttttgtatgatttgaa |
33127476 |
T |
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