View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12461_low_9 (Length: 335)
Name: NF12461_low_9
Description: NF12461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12461_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 33813742 - 33813978
Alignment:
| Q |
17 |
aatatcatctacgaaaagcaacttaacttgttggattataggctgatttaagacaaaaatatga-----ggtaaattggaactgaagtaggtctccaatt |
111 |
Q |
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| T |
33813742 |
aatatcatctacgaaaagcaacttaacttgttggattataggctgatttaagacaaaaatatgaagtactgtaaattggaactgaagtaggtctctaatt |
33813841 |
T |
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| Q |
112 |
aagtgacaaagcttgatatactggtgagcatatcagacaaacattttcaagcatcaaacagaatatatacaaaccaagaagttgaaacaagatcaacagt |
211 |
Q |
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| T |
33813842 |
aagtgacaaagcttaatatactggtgatcatatcagacaaacattttcaagcatcaaacagaatatatacaaaccaagaagttgaaacaagatcaacaat |
33813941 |
T |
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| Q |
212 |
ttccgtgacttgtgaaaagagctcctaaagaggtttc |
248 |
Q |
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| T |
33813942 |
ttccgtggcttgtgaaaagagctcctaaagaggtttc |
33813978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 33813998 - 33814046
Alignment:
| Q |
274 |
cttgtcataggtgaaatcattggtggtgccactgcaactcctggcctct |
322 |
Q |
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| T |
33813998 |
cttgtcataggtgaaatcattggtggtgccactgcaactcctggcctct |
33814046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 33809671 - 33809760
Alignment:
| Q |
68 |
gacaaaaatatgaggtaaattggaactgaagtaggtctccaattaagtgacaaagcttgatatactggtgagcatatcagacaaacattttca |
160 |
Q |
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| T |
33809671 |
gacaaaaatatgaggtaaattggaactcaagtagatctctaattaactgatagagcttgatattctgctg---atatcagacaaatattttca |
33809760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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