View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12462_low_2 (Length: 239)

Name: NF12462_low_2
Description: NF12462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12462_low_2
NF12462_low_2
[»] chr5 (5 HSPs)
chr5 (63-224)||(10502360-10502521)
chr5 (1-61)||(10502586-10502646)
chr5 (147-191)||(16937803-16937847)
chr5 (154-190)||(11615575-11615611)
chr5 (147-191)||(34736447-34736491)
[»] chr8 (5 HSPs)
chr8 (147-191)||(40859703-40859747)
chr8 (147-191)||(10758177-10758221)
chr8 (150-191)||(30251374-30251415)
chr8 (147-191)||(29818864-29818908)
chr8 (147-191)||(38602433-38602477)
[»] chr1 (2 HSPs)
chr1 (121-191)||(15477632-15477703)
chr1 (121-191)||(41505751-41505824)
[»] chr4 (8 HSPs)
chr4 (146-191)||(29388719-29388764)
chr4 (147-195)||(15173219-15173267)
chr4 (147-191)||(35571551-35571595)
chr4 (147-191)||(49940087-49940131)
chr4 (147-191)||(13126496-13126540)
chr4 (147-191)||(18815129-18815173)
chr4 (147-191)||(27043750-27043794)
chr4 (147-191)||(54426149-54426193)
[»] chr7 (5 HSPs)
chr7 (127-191)||(34083528-34083592)
chr7 (153-191)||(29363620-29363658)
chr7 (146-191)||(33128856-33128901)
chr7 (154-191)||(46281062-46281099)
chr7 (147-191)||(44822064-44822108)
[»] chr2 (8 HSPs)
chr2 (147-191)||(18179055-18179099)
chr2 (153-191)||(30990359-30990397)
chr2 (147-191)||(3312183-3312227)
chr2 (147-191)||(4607031-4607075)
chr2 (147-191)||(15305780-15305824)
chr2 (147-191)||(26202134-26202178)
chr2 (141-189)||(31561664-31561712)
chr2 (147-191)||(44119888-44119932)
[»] chr6 (2 HSPs)
chr6 (146-191)||(35069532-35069577)
chr6 (147-191)||(835181-835225)
[»] chr3 (1 HSPs)
chr3 (147-191)||(39980835-39980879)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 10502521 - 10502360
Alignment:
Q  63 tatagcaagttaaattttaagctgttttaaatagttaattagaacagcctatgtaaaatgtcaaaagctgttttgataagttctacaaaacttatgttag 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10502521 tatagcaagttaaattttaagctgttttaaatagttaattagaacagcctatgtaaaatgtcaaaagctgttttcataagttctacaaaacttatgttag 10502422  T
Q  163 cagataaggtcaaataagccaatccaaactggttgtacgacttgtgttgagagtttgtggtt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10502421 cagataaggtcaaataagccaatccaaactggttgtacgacttgtgttgagagtttgtggtt 10502360  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10502646 - 10502586
Alignment:
Q  1 aaggcatagaagaaggcattgagaaggtaagactagccttgtgtcgataaataacttattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10502646 aaggcatagaagaaggcattgagaaggtaagactagccttgtgtcgataaataacttattt 10502586  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 16937847 - 16937803
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  16937847 acaaaacttatgctagtagataagctcaaataagccaatccaaac 16937803  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 11615611 - 11615575
Alignment:
Q  154 ttatgttagcagataaggtcaaataagccaatccaaa 190  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  11615611 ttatgttagtagataagctcaaataagccaatccaaa 11615575  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 34736491 - 34736447
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||||| | |||||||| ||||||||| ||||||||||    
T  34736491 acaaaacttatgtcaccagataagctcaaataagtcaatccaaac 34736447  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 40859747 - 40859703
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  40859747 acaaaacttatgttagcagataagctcaaataagccaatccaaac 40859703  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 10758221 - 10758177
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||    
T  10758221 acaaaacttatgttagcagataagttcaaataagtcaattcaaac 10758177  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 30251415 - 30251374
Alignment:
Q  150 aaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||| || ||||||| ||||||||||||||||||||    
T  30251415 aaacttatgtcagtagataagctcaaataagccaatccaaac 30251374  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 29818908 - 29818864
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||||||    
T  29818908 acaaaacttatgatagtagataagctcaaatatgccaatccaaac 29818864  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 38602433 - 38602477
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||||| || ||||||| ||||||||| ||||||||||    
T  38602433 acaaaacttatgtcagtagataagctcaaataagtcaatccaaac 38602477  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 15477632 - 15477703
Alignment:
Q  121 tgtcaaaagctgttttgataagttct-acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||| |||||||||| ||||||||| ||||||||||||  || ||||||| || |||||||||||||||||    
T  15477632 tgtcataagctgttttcataagttctcacaaaacttatgcaagtagataagctctaataagccaatccaaac 15477703  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 41505751 - 41505824
Alignment:
Q  121 tgtcaaaagctgttttgataagttctacaaaac---ttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||| |||||||||| ||||||||| | ||||   |||||| || ||||||| ||||||||||||||||||||    
T  41505751 tgtcataagctgttttcataagttctcccaaacaacttatgtcagtagataagctcaaataagccaatccaaac 41505824  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 29388719 - 29388764
Alignment:
Q  146 tacaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  29388719 tacaaaacttatgttagtagataaggtcaaataagtcaacccaaac 29388764  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 15173267 - 15173219
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaactggt 195  Q
    ||||||||||||| || ||||||| ||||||||| ||||||||||||||    
T  15173267 acaaaacttatgtcagtagataagttcaaataagtcaatccaaactggt 15173219  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 35571595 - 35571551
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  35571595 acaaaacttatgctagtagataagctcaaataagccaatccaaac 35571551  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 49940131 - 49940087
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||||    
T  49940131 acaaaacttatgttagcaggtaagctcaaataagtcaatccaaac 49940087  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 13126540 - 13126496
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||||||||| || |||| | ||||||||||||||||||    
T  13126540 acaaaacttatgttagtaggtaagctaaaataagccaatccaaac 13126496  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 18815129 - 18815173
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||||| ||| || |||| ||||||||||||||||||||    
T  18815129 acaaaacttatgctagtaggtaagctcaaataagccaatccaaac 18815173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 27043794 - 27043750
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||||| || ||||||| ||||||||| ||||||||||    
T  27043794 acaaaacttatgtcagtagataagctcaaataagtcaatccaaac 27043750  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 54426149 - 54426193
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||||  || ||||||| ||||||||||||||||||||    
T  54426149 acaaaacttatgccagtagataagctcaaataagccaatccaaac 54426193  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 34083592 - 34083528
Alignment:
Q  127 aagctgttttgataagttctacaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||| ||||||||||| |||||||||  || |||| || ||||||||| ||||||||||    
T  34083592 aagctgttttcataagttctaccaaacttatgcaagtagatgagctcaaataagtcaatccaaac 34083528  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 29363620 - 29363658
Alignment:
Q  153 cttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  29363620 cttatgttagtagataagttcaaataagccaatccaaac 29363658  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 33128856 - 33128901
Alignment:
Q  146 tacaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||| ||||||| ||||| ||||||||| ||||||||||    
T  33128856 tacaaaacttaagttagcatataagctcaaataagtcaatccaaac 33128901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 46281099 - 46281062
Alignment:
Q  154 ttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  46281099 ttatgttagtagataagttcaaataagccaatccaaac 46281062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 44822064 - 44822108
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||||| |||||||||  ||||||||| ||||||||||    
T  44822064 acaaaacttatgtcagcagataaactcaaataagtcaatccaaac 44822108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 18179055 - 18179099
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||||    
T  18179055 acaaaacttatgttagtagataagctcaaataagtcaatccaaac 18179099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 30990397 - 30990359
Alignment:
Q  153 cttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  30990397 cttatgttagtagataagctcaaataagccaatccaaac 30990359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 3312183 - 3312227
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||| || || ||||||| ||||||||||||||||||||    
T  3312183 acaaaacttacgtcagtagataagctcaaataagccaatccaaac 3312227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 4607031 - 4607075
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||| || | ||||||| ||||||||||||||||||||    
T  4607031 acaaaacttatattggtagataagctcaaataagccaatccaaac 4607075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 15305780 - 15305824
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||||| |  ||||||| ||||||||||||||||||||    
T  15305780 acaaaacttatgtcaatagataagctcaaataagccaatccaaac 15305824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 26202134 - 26202178
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||||| |||||||||| |||||||||  |||||||||    
T  26202134 acaaaacttatgtcagcagataagttcaaataagttaatccaaac 26202178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 31561712 - 31561664
Alignment:
Q  141 agttctacaaaacttatgttagcagataaggtcaaataagccaatccaa 189  Q
    |||| ||||||||||||||||| ||||||  ||||||||| ||||||||    
T  31561712 agttttacaaaacttatgttagtagataatctcaaataagtcaatccaa 31561664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 44119888 - 44119932
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    ||||||||||||| ||||  |||| ||||||||||||||||||||    
T  44119888 acaaaacttatgtcagcatgtaagctcaaataagccaatccaaac 44119932  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 35069577 - 35069532
Alignment:
Q  146 tacaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||||||| || ||||||| |||||||||||||| |||||    
T  35069577 tacaaaacttatgtcagtagataagctcaaataagccaatacaaac 35069532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 835225 - 835181
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||||| ||| ||||||| ||||||||| ||||||||||    
T  835225 acaaaacttatgctagtagataagctcaaataaggcaatccaaac 835181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 39980835 - 39980879
Alignment:
Q  147 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 191  Q
    |||||||||||| ||| ||||||| ||||| ||||||||||||||    
T  39980835 acaaaacttatgctagtagataagctcaaacaagccaatccaaac 39980879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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