View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12463_high_1 (Length: 669)
Name: NF12463_high_1
Description: NF12463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12463_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 19 - 657
Target Start/End: Original strand, 39983782 - 39984420
Alignment:
| Q |
19 |
ttctataccttcattcattgtttatgcattcacaggcatccattttccataacttctgcccctaatgatgattaccttagtgttcatattaaaatacttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39983782 |
ttctataccttcattcattgtttatgcattcacaggcatccattttccataacttctgcccctaatgatgattaccttagtgttcatattaaaatacttg |
39983881 |
T |
|
| Q |
119 |
gtgattggactagaagtctgaaaaccaaattctcacaggtgaatattattatttttattatccctgaccggaattgattatgtgttttcttataattaac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39983882 |
gtgattggactagaagtctgaaaaccaaattctcacaggtgaatattattattaatattatcgctgaccggaattgattatgtgttttcttataattaac |
39983981 |
T |
|
| Q |
219 |
aagtttattgcttttgtttctatcaggcttgccagccagccatcaatggacagagtggacttctaagagttgaatgcttgaaaggagataacagcccaag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39983982 |
aagtttattgcttttgtttctatcaggcttgccagccagccatcaatggacagagtggacttctaagagctgaatgcttgaaaggagataacagcccaag |
39984081 |
T |
|
| Q |
319 |
gtatgccttattgtttttgcctttggcaaatattattatttttctacaaatatctgatagtaggtaggtaacatgcaaaaactgtagttggctacggcac |
418 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39984082 |
gtatgccttattgtttttgcttttggcaaatattattatttttctacaaatatctgatagtaggtaggtaacatgcaaaaactgtagttggctacggcac |
39984181 |
T |
|
| Q |
419 |
ttaacaaaatatgtttagatttaattattcagataacccactacaagtgagttccatgttggttaacttcacctgtaagataaggatttaaatatcagga |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39984182 |
ttaacaaaatatgtttagatttaattattcagataacccactacaagtgagttccatgttggttaacttcacctgtaagataaggatttaaatatccgga |
39984281 |
T |
|
| Q |
519 |
aaagcctataactaaggtttggacactattctattaaatagtacgttagtgaaacttaatttcacaccaaacgaatgtaaagtccttacaatagaagtta |
618 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39984282 |
aaagcctataactaaggttaggacactattctattaaatagtacgttagtgaaacttaatttcacaccaaacgaatgtaaagtccttacaatataagtta |
39984381 |
T |
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| Q |
619 |
tacgtacttttggttaattaaagtaaaaggatagcacag |
657 |
Q |
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| T |
39984382 |
tacgtacttttggttaattaaagtaaaaggatagcacag |
39984420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 44916565 - 44916616
Alignment:
| Q |
270 |
agagtggacttctaagagttgaatgcttgaaaggagataacagcccaaggta |
321 |
Q |
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|||||||||||||||||| ||||||| || |||| |||| |||||||||||| |
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| T |
44916565 |
agagtggacttctaagagctgaatgcatgcaaggggatagcagcccaaggta |
44916616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 44900003 - 44900048
Alignment:
| Q |
35 |
attgtttatgcattcacaggcatccattttccataacttctgcccc |
80 |
Q |
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||||||||||| ||||||||||||||||||| ||||| || ||||| |
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| T |
44900003 |
attgtttatgctttcacaggcatccattttctataacctccgcccc |
44900048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 44916249 - 44916361
Alignment:
| Q |
47 |
ttcacaggcatccattttccataacttctgcccctaatgatgattaccttagtgttcatattaaaatacttggtgattggactagaagtctgaaaaccaa |
146 |
Q |
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||||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||| || | || | | ||||| ||||| |||||||| | | ||| |
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| T |
44916249 |
ttcacaggcatccgttttccataacctcttccccaggagatgactaccttagtgttcacatcagaacattaggtgactggaccagaagtctcagagtcaa |
44916348 |
T |
|
| Q |
147 |
attctcacaggtg |
159 |
Q |
| |
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||||||| ||||| |
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|
| T |
44916349 |
attctcagaggtg |
44916361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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