View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12463_high_3 (Length: 541)
Name: NF12463_high_3
Description: NF12463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12463_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 219334 - 218823
Alignment:
| Q |
19 |
gtgccaatctcttaaccccttgatgatgatagctattaaccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaaggtgt |
118 |
Q |
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| T |
219334 |
gtgccaatctcttaaccccttgatgatgatagctattaaccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaaggtgt |
219235 |
T |
|
| Q |
119 |
gtttttaacaaccttaataacatgtctatgaccatcataatcatcatagtttatatgcatcacatggctattttttgaaagctcttttgatacgtcccta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219234 |
gtttttaacaaccttaataacatgtctatgaccatcataatcatcatagtttatatgcatcacatggctattttttgaaagctcttttgatacgtcccta |
219135 |
T |
|
| Q |
219 |
taaagggtacctccacatgcaacattaaggacttgtgaacctctacaaattcctaagtaaggaatgtttctttcaagacaaagctttgctaagactaatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
219134 |
taaagggtacctccacatgcaacattaaggacttgtgaacctctacaaattcctaagtaaggaatgtttctttcaagacaaagctttgctaagattaatt |
219035 |
T |
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| Q |
319 |
caattgaatctttttctttgtcaatgtttgtgtcacttgaatgaagctttttgatttcttctaactcttcatgtgaaagattacatgttgtgttatcttg |
418 |
Q |
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| T |
219034 |
caattgaatctttttctttgtcaatgtttgtgtcacttgaatgaagctttttgatttcttctaactcttcatgtgaaagattacatgttgtgttatcttg |
218935 |
T |
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| Q |
419 |
ttcgtaccatgaaggatctatgtcttctccttcacatagaagaacaccatgaattggttcaaagctctttaacaacatgtgtatacctgaaacacgtggt |
518 |
Q |
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| T |
218934 |
ttcgtaccatgaaggatctatgtcttctccttcacatagaagaacaccatgaattggttcaaagctctttaacaacatgtgtatacctgaaacacgtggt |
218835 |
T |
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| Q |
519 |
acaatcacaggt |
530 |
Q |
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| T |
218834 |
acaatcacaggt |
218823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 225 - 517
Target Start/End: Original strand, 31652090 - 31652376
Alignment:
| Q |
225 |
gtacctccacatgcaacattaaggacttgtgaacctctacaaattcctaagtaaggaatgtttctttcaagacaaagctttgctaagactaattcaattg |
324 |
Q |
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|||||||||||||| ||||| |||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||| || |||| |||||||||||| |
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| T |
31652090 |
gtacctccacatgccacatttaggagttgtgaccctctacaaattcccaagtaaggaatatttctttcaagacaaagtttggctagtgctaattcaattg |
31652189 |
T |
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| Q |
325 |
aatctttttctttgtcaatgtttgtgtcacttgaatgaagctttttgatttcttctaactcttcatgtgaaagattacatgttgtgttatcttgttcgta |
424 |
Q |
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| T |
31652190 |
aatctttttctttgtcaattgatgtgtcactcacatgtagtcttcttatttcttctaattcctcttgagaaag---acatgatgtg---tcttcctcgta |
31652283 |
T |
|
| Q |
425 |
ccatgaaggatctatgtcttctccttcacatagaagaacaccatgaattggttcaaagctctttaacaacatgtgtatacctgaaacacgtgg |
517 |
Q |
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|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||| | || ||||||||||| |
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| T |
31652284 |
ccatgatggatcaatgtcttctccttcacatagaagcacaccatggattggttcaaagctatctaacaacatgtggaccccggaaacacgtgg |
31652376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 31651879 - 31652031
Alignment:
| Q |
26 |
tctcttaaccccttgatgatgatagctattaaccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaaggtgtgttttta |
125 |
Q |
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||||||||| ||||||||||||||||||||||||||||| || |||| |||| || |||||||||||||||||||| | ||||||||| |||| | |
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| T |
31651879 |
tctcttaacaccttgatgatgatagctattaaccaaaatgtc---cattttatcatcttccaaagaatccttaaaccaatgatgcaaaggtgtattttca |
31651975 |
T |
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| Q |
126 |
acaaccttaataacatgtctatgaccatcataatcatcatagtttatatgcatcac |
181 |
Q |
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| T |
31651976 |
acaacttttacctcatgtctatgaccatcataatcatcatagttaatatgcatcac |
31652031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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