View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12463_high_4 (Length: 525)
Name: NF12463_high_4
Description: NF12463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12463_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 14 - 500
Target Start/End: Original strand, 44130692 - 44131169
Alignment:
| Q |
14 |
cctgtgtgttgaatttaaagccctaagttttgcaggaattcacattattcgaataatagggtgtctaaatgtcctaaaaaatttccttnnnnnnnnntgt |
113 |
Q |
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| T |
44130692 |
cctgtgtgttgaatttaaagccctaagttttgcagggattcacattattcgaataatagggtgtctaaatgtcctaaaaattttccttaaaaaaaa-tgt |
44130790 |
T |
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| Q |
114 |
cctaagttttgatttttatgtaaatatataacnnnnnnnnnnnnnngctcaacaattgttttattcttgccaccatattgccattcaataatttagatga |
213 |
Q |
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| T |
44130791 |
cctaagttttgatttttatgtaaatatataacttttttccttttttgctcaacaattgttttattcttgccaccatattgccattcaataatttagatga |
44130890 |
T |
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| Q |
214 |
cttatgcnnnnnnnnnnnngacaagagacttaagctatgttaggataccagtggaatgagaaggaatagaataaagttgatgaacgaaactaaatggaat |
313 |
Q |
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| T |
44130891 |
cttatgctttttttttt--gacaagagacttaagctatgtttggataccagtggaatgagaaggaatagaataaagttgatgaacgaaactaaatggaat |
44130988 |
T |
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| Q |
314 |
aaagacacaatttcattgtttgaacattttgatgatgaaattgagaagactagtttcatctaatttcactcaaattagaggggcagggcaagtaaaagag |
413 |
Q |
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| T |
44130989 |
aaagacacaatttcattgtttgaacattttgatgatgaaattgagaagactagtttcatctaatttcactcaaattag------agggcaagtaaaagag |
44131082 |
T |
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| Q |
414 |
ggtattatataggcaaatatgtgaataattctgtgcacattatgaaatatgagtagataatcgcttttctcatacacattgccctat |
500 |
Q |
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| T |
44131083 |
ggtattatataggcaaatatgtgaataattctgtgcacattatgaaatatgagtagataatcgcttttctcatacacaatgccctat |
44131169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 44148141 - 44148289
Alignment:
| Q |
247 |
gctatgttaggataccagtggaatgagaaggaatagaataaagttgatgaacgaaactaaatggaataaagacacaatttcattgtttgaacattttgat |
346 |
Q |
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|||||| | ||||| ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44148141 |
gctatgcttggatatcagtggaattagaaggaatagaatgaagttgatgaacgaagctaaatggaataaagacaccatttcattgtttgaacattttgat |
44148240 |
T |
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| Q |
347 |
gatgaaattgagaagactagtttcatctaatttcactcaaattagaggg |
395 |
Q |
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| T |
44148241 |
ggtgaaattgagaagactagtttcatctaatttcactcaaattggaggg |
44148289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 44147938 - 44148013
Alignment:
| Q |
15 |
ctgtgtgttgaatttaaagccctaagttttgcaggaattcacattattcgaataatagggtgtctaaatgtcctaa |
90 |
Q |
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| T |
44147938 |
ctgtgtgttgaatttaaagccctatgttttgcatgaattcgcattattcgaaaaatagggtgtctaaatgtcctaa |
44148013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Original strand, 44149568 - 44149608
Alignment:
| Q |
422 |
ataggcaaatatgtgaataattctgtgcacattatgaaatat |
463 |
Q |
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| T |
44149568 |
ataggcaaatatgtgaataattttgtgcac-ttatgaaatat |
44149608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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