View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12463_low_6 (Length: 297)
Name: NF12463_low_6
Description: NF12463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12463_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 42258389 - 42258124
Alignment:
| Q |
19 |
ttaactttacaataaactgttataagcaccatcagaatcaataaacagttatttgaagcagtttaaagactttaaggtatgtgactttaggcctttagca |
118 |
Q |
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| T |
42258389 |
ttaactttacaataaactgttataagcaccatcagaatcaataaacagttatttgaagcagtttaaagactttaaggtatgtgactttaggcctttagca |
42258290 |
T |
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| Q |
119 |
aacaaattagttttaataaattttgtttcaaccccacagccatatgtaaagcagggacaagcattttgctaaagagaaggaaagagaaaactaaaaagga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42258289 |
aacaaattagttttaataaattttgtttcaaccccacagccatatgtaaagtagggacaagca-tttgctaaagagaaggaaagagaaaactaaaaagga |
42258191 |
T |
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| Q |
219 |
acaagtttgttaacaaaaaattcgttgttgaagaatcactcctcaactcttaacatcttctgtgctg |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42258190 |
acaagtttgttaacaaaaaattcgttgttgaagaatcactcctcaactcttaacatcttctgtgctg |
42258124 |
T |
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