View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12464_high_1 (Length: 486)
Name: NF12464_high_1
Description: NF12464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12464_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 32956025 - 32955629
Alignment:
| Q |
19 |
aagagcaaacgccgcggttgccacgacagccgcgactaacggcggcataatggagtcaggaaacttctacagtaacaacaacaacaa---ttcatggtac |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32956025 |
aagagcgaacgccgcggttgccacgacagctgcgactaacggtggcataatggagtcaggaaacttctacagtaacaacaacaacaacaattcatggtac |
32955926 |
T |
|
| Q |
116 |
tcacaaccacagagtcaaatgtatggcaatgagctacgtttcatggatgattcagatgcagaatcagaaaatggcattcctaatttcctttcttggagac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32955925 |
tcacaaccacagagtcaaatgtatggcaatgagctacgtttcatggatgattcagatgcagaatcagaaaatggcattcctaatttcctttcttggagac |
32955826 |
T |
|
| Q |
216 |
tcaacacaagtcttgttcacgattacacaagatgaagcattggaattagaagttacgatgatattgatgatgatgacgacataagcttaatattcctaag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | |
|
|
| T |
32955825 |
tcaacacaagtcttgttcacgattacacaagatgaagcattggaattagaagtt---------------atgatgatgacataagcttaatattcctacg |
32955741 |
T |
|
| Q |
316 |
ataatagaacagaaagaagacaaaaaatgatgatgtagatgtaggtgtacgacaatgttttacgatgtagatgtttttgattgtgatggttatgttatgg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32955740 |
ttaatagaacagaaagaagacaaaaaatgatgatgtagatgtaggtgtacgacaatgttttacgatgtagatgtttttgattgtgatggttatgttatgg |
32955641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University