View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12464_low_3 (Length: 346)
Name: NF12464_low_3
Description: NF12464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12464_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 59 - 271
Target Start/End: Original strand, 54085019 - 54085233
Alignment:
| Q |
59 |
atggttgatgccatgcatcatgtgtgttttagtaataaaaatcagttgtgtttcaattcaacctttgttttagtcttttcctgttatgattccaaatttc |
158 |
Q |
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| T |
54085019 |
atggttgatgccatgcatcatgtgtgttttagtaataaaaatcagttgtgtttcaattcaacctttgttttagtcttttcctgttatgattccaaatttc |
54085118 |
T |
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| Q |
159 |
caatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctgaattcagatatat--aaaagag |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54085119 |
caatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctgaattcagatatataaaaaagag |
54085218 |
T |
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| Q |
257 |
tattacttaattaag |
271 |
Q |
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||||||||||||||| |
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| T |
54085219 |
tattacttaattaag |
54085233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 41 - 250
Target Start/End: Original strand, 54081596 - 54081802
Alignment:
| Q |
41 |
aaataatgaacatgttagatggttgatgccatgcatcatgtgtgttttagt-aataaaaatcagttgtgtttcaatt-caaccttt-gttttagtctttt |
137 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||| ||||||||||| | |
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| T |
54081596 |
aaataatgaacacgttagatggttgattccatgcatcatgtgtgttttagtgaagaaaaattagttgtgtttcaatttcaaccttttgttttagtcttct |
54081695 |
T |
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| Q |
138 |
cctgttatgattccaaatttccaatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctga |
237 |
Q |
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| T |
54081696 |
--tgttatga----aaatttccaatatctacttgtaatttggcatagctttaactttttgagttgtagatgatggcactgttgtattgtaccatggttga |
54081789 |
T |
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| Q |
238 |
attcagatatata |
250 |
Q |
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||||||||||||| |
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| T |
54081790 |
attcagatatata |
54081802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 54084942 - 54084997
Alignment:
| Q |
18 |
aaattagtagctggtgtgtacctaaataatgaacatgttagatggttgatgccatg |
73 |
Q |
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| T |
54084942 |
aaattagtagctggtgtgtacctaaataatgaacatgttagatggttgatgccatg |
54084997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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