View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12465_high_1 (Length: 700)
Name: NF12465_high_1
Description: NF12465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12465_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 44385568 - 44385417
Alignment:
| Q |
55 |
attaaacctatataatgaacagtagacatgattgcggctcaactcgagtaacaaatttgaatattgaaagaaaatgggtgaatgtgactgaagccacttt |
154 |
Q |
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| T |
44385568 |
attaaccctatataatgaacagtagacatgattgcggctc-----gagtaacaaatttgaagattgaaagaaaatgggtgaatgtgactcaagccacttt |
44385474 |
T |
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| Q |
155 |
gttcttctgacacgaaggtcagatactactatgaaaaatgacccactttctccaaga |
211 |
Q |
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| T |
44385473 |
gttcttctgacgcgaaggtcggatattaatatgaaaaatgacccactttctccaaga |
44385417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 483 - 613
Target Start/End: Complemental strand, 5713558 - 5713428
Alignment:
| Q |
483 |
gaaataaacaaccgatagatccataaatccaaatgttggtaatcctaaagtatgaccnnnnnnnnnnnnnnnnnnnncacaagtacatagaatgcagtaa |
582 |
Q |
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| T |
5713558 |
gaaataaacaaccgatagatccataaatccaattgttggtaatcctaaagtatgaccaaataaaaaataaataaaaacacaagtacatagaatgcagtaa |
5713459 |
T |
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| Q |
583 |
cttccttagtgccgacaaacatcatcaaact |
613 |
Q |
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| T |
5713458 |
cttccttagtgccgacaaacatcatcaaact |
5713428 |
T |
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