View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12465_high_2 (Length: 487)
Name: NF12465_high_2
Description: NF12465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12465_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 249 - 456
Target Start/End: Original strand, 20015779 - 20015981
Alignment:
| Q |
249 |
caaacatccacatataatgtgaatgaaaataacaccaattgctcgaacttcaaattaacgacagtttaatcaacaataatccatgaagtcactactaatc |
348 |
Q |
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| T |
20015779 |
caaacatccacatataatgtgaatgaaaataacaccaattgctcaaacttcaaattaacgacagtt-aatcaacaataatccatgaagtcaccactaatc |
20015877 |
T |
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| Q |
349 |
aaagcaagaacaaaataaaaaacatgcataaccataaattaaaatatcggttgaagttaaatctcattctgaagtgacaaagtggtgcatcctcgcatta |
448 |
Q |
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| T |
20015878 |
aaagcaagaacaaaataaaaaacat----aaccataaattaaaatatcggttgcagttaaatctcattccgaagtgacaaagtggtgcatcctcgcattg |
20015973 |
T |
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| Q |
449 |
aagacaag |
456 |
Q |
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|||||||| |
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| T |
20015974 |
aagacaag |
20015981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 20015605 - 20015737
Alignment:
| Q |
120 |
aagatatatgtaaatacatttggtgtaacataactataccggattacaaaaaataagtacaatggaacagaaaatcgagtacattcaatacattttaggg |
219 |
Q |
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| T |
20015605 |
aagatatatgtaaatacatttggtgtaacataactataccggattacaaaaaataagtacaatggaacaaaaaatcgagtacattcagtacattttaggg |
20015704 |
T |
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| Q |
220 |
aatatgcatttgaaagaggaaaggcgacacaaa |
252 |
Q |
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| T |
20015705 |
aatatgcatttgaaagaggaaaggccacacaaa |
20015737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 166 - 427
Target Start/End: Original strand, 20019300 - 20019538
Alignment:
| Q |
166 |
caaaaaataagtacaatggaacagaaaatcgagtacattcaatacattttagggaatatgcattt--gaaagaggaaaggcgacacaaacatccacatat |
263 |
Q |
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| T |
20019300 |
caaaaaataagtacaatgaaacaaaaaattgagtacaatcaatacattttagggaatatgcatttttgaaagaggaaaggctgcgcaaag-------tat |
20019392 |
T |
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| Q |
264 |
aatgtgaatgaaaataacaccaattgctcgaacttcaaattaacgacagtttaatcaacaataatccatgaagtcactactaatcaaagcaagaacaaaa |
363 |
Q |
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| T |
20019393 |
aaaaataatggaa-taacaccaattgctcaaacttcaaattaaccacaatt-aatcaacaataatccatgaaatcaccggtaa------------caaaa |
20019478 |
T |
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| Q |
364 |
taaaaaacatgcataaccataaattaaaatatcggttgaagttaaatctcattctgaagtgaca |
427 |
Q |
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| T |
20019479 |
taaaaaacat---taac-ataaattaaaatataggttgtagttaaatctcatgctgaagtgaca |
20019538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 20015553 - 20015609
Alignment:
| Q |
18 |
atcggaatcattagaatgaggaagaaagaaaaggtctgaaacatcttccattaagat |
74 |
Q |
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| T |
20015553 |
atcggaatcattagaatgaggaagaaagaaaaggtccgaaacatcttccattaagat |
20015609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 20019164 - 20019239
Alignment:
| Q |
42 |
aaagaaaaggtctgaaacatcttccattaagattcagaattggagacataaactaaatgttcaatcattatttgac |
117 |
Q |
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| T |
20019164 |
aaagaaaaggtctgaaacatcttccattaagattcataactgaagaaataaaccacatgttcaatcattatttgac |
20019239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 20538552 - 20538478
Alignment:
| Q |
86 |
gacataaactaaatgttcaatcatta-tttgacggaagatatatgtaaatacatttggtgtaacataactatacc |
159 |
Q |
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||||||||| | || ||||||||||| ||| || | ||||||||||||||||| ||||||||||||| |||||| |
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| T |
20538552 |
gacataaaccatattttcaatcattaattttacctaggatatatgtaaatacatctggtgtaacataattatacc |
20538478 |
T |
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