View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12465_high_3 (Length: 427)
Name: NF12465_high_3
Description: NF12465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12465_high_3 |
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| [»] scaffold0400 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 14407575 - 14407992
Alignment:
| Q |
1 |
gatattagagtgcctccaactgctgatacagaatcattggagaggcgaattgctgaagagtgggcaccaacttcgcgcaatatgtctttcactgtaagga |
100 |
Q |
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||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14407575 |
gatattagagtaccaccaactgctgatacaaaatcattggagaggcgaattgctgaagagtgggcacctacttcgcgcaatatgtctttcactgtaagga |
14407674 |
T |
|
| Q |
101 |
gctaattatccactttgctt-atatgtttatcgtccatgtcttgtaaatacacaattctctccgctagtaggtgtctgcttcgtctttcgtaacatatgt |
199 |
Q |
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||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14407675 |
gctaattatccacttcgctttatatttttatcgtccatgtcttgtaaatacacaatactctccgctaataggtgtctgcttcgtctttcgtaacatatgt |
14407774 |
T |
|
| Q |
200 |
atattagaacatatcagatcattgccttcatcttctgcaattttatcctcttttcttttctttgtgaaaaggttaatgttatgacagttcctcgaaattt |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
14407775 |
atattagaacatatcagatcattgccttaatcttctgcaattt-atcctcttttcttttctctgtgaaaaggttaatgttatgacagttcctcaaaattt |
14407873 |
T |
|
| Q |
300 |
catacataacgtgattatttattttatgaatttccttcttttgagaataatctaccccttattaaattcttcctctaacatcttttagctctgacagttc |
399 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
14407874 |
catacacaacgtgattatttattttatgaatttcctttttttgagaacaaattaccccttattagattctttctctaacatcttttagctctgacagttc |
14407973 |
T |
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| Q |
400 |
aaagaaaagatatctgtgc |
418 |
Q |
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| T |
14407974 |
aaagaaaagatatctgtgc |
14407992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 14437370 - 14437521
Alignment:
| Q |
1 |
gatattagagtgcctccaactgctgatacagaatcattggagaggcgaattgctgaagagtgggcaccaacttcgcgcaatatgtctttcactgtaagga |
100 |
Q |
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|||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||||| | || |||||||||||||||| |||| | |
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| T |
14437370 |
gatattagagtgccaccaactgctgatgcagaatcattagagaggcgaattgccgaagagtgggcacctagttgccgcaatatgtctttcagggtaatta |
14437469 |
T |
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| Q |
101 |
gctaattatccactttgcttatatgtttatcgtccatgtcttgtaaatacaca |
153 |
Q |
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| T |
14437470 |
actaaatgtccattatgctt-tatatttatcatccatgtcttgtaaatacaca |
14437521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 1201 - 1050
Alignment:
| Q |
1 |
gatattagagtgcctccaactgctgatacagaatcattggagaggcgaattgctgaagagtgggcaccaacttcgcgcaatatgtctttcactgtaagga |
100 |
Q |
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|||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||||| | || |||||||||||||||| |||| | |
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| T |
1201 |
gatattagagtgccaccaactgctgatgcagaatcattagagaggcgaattgccgaagagtgggcacctagttgccgcaatatgtctttcagggtaatta |
1102 |
T |
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| Q |
101 |
gctaattatccactttgcttatatgtttatcgtccatgtcttgtaaatacaca |
153 |
Q |
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|||| | |||| | ||||| ||| |||||| ||||||||||||||||||||| |
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| T |
1101 |
actaaatgtccattatgctt-tatatttatcatccatgtcttgtaaatacaca |
1050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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