View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12465_high_5 (Length: 354)
Name: NF12465_high_5
Description: NF12465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12465_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 3 - 340
Target Start/End: Original strand, 26210391 - 26210728
Alignment:
| Q |
3 |
ccccgaaagtgtgacccgactactctcatcacaacctgaaccagaaaacgatgttgttttatgtttcttagacttagacaacgactttgcaccatttttc |
102 |
Q |
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| T |
26210391 |
ccccgaaagtgtgacccgactactctcatcacaactcgaaccagaaaacgatgttgttttatgtttcttagacttagacaacgactttgcaccatttttc |
26210490 |
T |
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| Q |
103 |
ttcgacattctatctgcggttaaatccacggaacaatcaatatcttcaataacgataattgaacgatttgttgtttggatcaaaagtgaacgaagctcgg |
202 |
Q |
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| T |
26210491 |
ttcgacattctatctgcggttaaatccacagaacaatcaatatcttcaataacgataattgaacgatttgttgtttggatcaaaagtgaacgaagctcgg |
26210590 |
T |
|
| Q |
203 |
agttatcagaaactttcgtaagttccaaatcataaacatcataacatagaaaattcgccattgcagcaatgaggctggatttacccgacccaggtggacc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26210591 |
agttatcagaaactttcgtaagttccaaatcataaacatcataacatagaaaattcgccattgcagcaatgaggctggatttacccgacccaggtggacc |
26210690 |
T |
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| Q |
303 |
atgaagcaagtaaccacgtttccaagctcgcccgaccc |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26210691 |
atgaagcaagtaaccacgtttccaagctcgcccgaccc |
26210728 |
T |
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