View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12465_high_6 (Length: 338)
Name: NF12465_high_6
Description: NF12465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12465_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 45377713 - 45378038
Alignment:
| Q |
1 |
cacatattttcgtatatgatctctcacaaacctctcatacaagtaagcagcccccatgaactgaggtaacaccaaccatgctgccaccaatagcttcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45377713 |
cacatattttcgtatatgatctctcacaaacctctcatacaagtaagcagcccccatgaactgaggtaacaccaaccatgctgccaccaatagcttcaca |
45377812 |
T |
|
| Q |
101 |
tcgtaccaaattggtatcctacaaatttccaatccattttttcattacatattcctagtacttatgtgtataataatcaatttcattcattctaaagaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45377813 |
tcgtaccaaattggtatcctacaaatttccaattcattttttcattacatattcctagtacttatgtgtataataatcaatttcattcattctaaaaaca |
45377912 |
T |
|
| Q |
201 |
attaaaaatagttaaaactctcaccactctagagcaggttgcataagcatctccccaagggtgaggaaggaatagattatccaataagctagccactgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45377913 |
attaaaaatagttaaaactctcaccactctagagcaggttgcataagcatctccccaagggtgaggaaggaatagattatccaataagctagccactgtt |
45378012 |
T |
|
| Q |
301 |
catcatccagcttcgatggactctct |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
45378013 |
catcatccagcttcgatggactctct |
45378038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University