View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12465_high_9 (Length: 305)
Name: NF12465_high_9
Description: NF12465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12465_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28216760 - 28216528
Alignment:
| Q |
1 |
tattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggacaaaaagaatgaaaataacaaggtgtttgaggaggaggttgctgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||| |
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| T |
28216760 |
tattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggagaaaaagactgaaaataacaaggcatttgaggaggaggttgttgg |
28216661 |
T |
|
| Q |
101 |
cttgaagaaaagtgtagatatgctcaaggggcaatc---------cgatatggaaattgaggatttgaag-aaagtataaatacgctcaatgggcaatcc |
190 |
Q |
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||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| |||| ||| | |||||||| ||||||||| |
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| T |
28216660 |
cttgaagaaaagtgtagatgcgctcaaggggaaatcggccgcgaaggatatggaaattgaggatttgaagaaaagaatagacacgctcaaggggcaatcc |
28216561 |
T |
|
| Q |
191 |
gcagcaaaaggatatggaaattgaggatttgaag |
224 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
28216560 |
gcagc-gaaggatatggaaattgaggatttgaag |
28216528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28237632 - 28237400
Alignment:
| Q |
1 |
tattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggacaaaaagaatgaaaataacaaggtgtttgaggaggaggttgctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| ||| |
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| T |
28237632 |
tattgaaggtaaataagagattggaggaagaacaaactgctctgactcagttggagaaaaagactgaaaataacaaggcgtttgaggaggaggttgttgg |
28237533 |
T |
|
| Q |
101 |
cttgaagaaaagtgtagatatgctcaaggggcaatcc---------gatatggaaattgaggatttgaag-aaagtataaatacgctcaatgggcaatcc |
190 |
Q |
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| T |
28237532 |
cttgaagaaaagtgtagatacgctcaaggggctatccgcttcgaaggatgtggaaattgaggatttgaagaaaagtacagatacgctcaagaggcaatcc |
28237433 |
T |
|
| Q |
191 |
gcagcaaaaggatatggaaattgaggatttgaag |
224 |
Q |
| |
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|| | ||||||||||||||||||||||||||| |
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| T |
28237432 |
acaac-caaggatatggaaattgaggatttgaag |
28237400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 28216551 - 28216412
Alignment:
| Q |
138 |
gatatggaaattgaggatttgaagaaa-gtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggatttgaagttagatactgcc |
236 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28216551 |
gatatggaaattgaggatttgaagaaaagtataaatacgctcaatgggcaatccgcagcaaa-ggatatggaaattgaggatttgaagttagatactgcc |
28216453 |
T |
|
| Q |
237 |
tttcgctataaagatggttttgataaggccatagaacaagt |
277 |
Q |
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| T |
28216452 |
tttcgctatcaagatggttttgataaggccatagaacaagt |
28216412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28232803 - 28232571
Alignment:
| Q |
1 |
tattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggacaaaaagaatgaaaataacaaggtgtttgaggaggaggttgctgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| | ||| |
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| T |
28232803 |
tattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggagaaaaagaatgaaaataacaaagcgtttgaggaggaggaggttgg |
28232704 |
T |
|
| Q |
101 |
cttgaagaaaagtgtagatatgctcaaggggcaatcc---------gatatggaaattgaggatttgaag-aaagtataaatacgctcaatgggcaatcc |
190 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||| ||||| || ||| |||||| |||| |||| |
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| T |
28232703 |
cttgaagaaaagtgtagatatgctaaaggggctatccattgcgaaggatgtggaaattgaggatttgaagaaaagtgtagatatgctcaaggggctatcc |
28232604 |
T |
|
| Q |
191 |
gcagcaaaaggatatggaaattgaggatttgaag |
224 |
Q |
| |
|
|| || |||||| ||||||||||||| |||||| |
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| T |
28232603 |
gctgc-gaaggatgtggaaattgaggacttgaag |
28232571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 101 - 277
Target Start/End: Complemental strand, 28232577 - 28232392
Alignment:
| Q |
101 |
cttgaagaaaagtgtagatatgctcaaggggcaatccg---------atatggaaattgaggatttgaagaaa-gtataaatacgctcaatgggcaatcc |
190 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||| |||| ||||| |||| ||||||||| |
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| T |
28232577 |
cttgaaggaaagtgtagatatgctcaaggggaaatccgcagcgaaggatatagaaattgaggaattgaagaaaagtatggatacgttcaaggggcaatcc |
28232478 |
T |
|
| Q |
191 |
gcagcaaaaggatatggaaattgaggatttgaagttagatactgcctttcgctataaagatggttttgataaggccatagaacaagt |
277 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
28232477 |
gcagcaaa-ggatatggaaattgaggatttgaaggtagacgctgccttgcgctatcaagatggttttgataaggccatagaacaagt |
28232392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 28237423 - 28237284
Alignment:
| Q |
138 |
gatatggaaattgaggatttgaagaaa-gtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggatttgaagttagatactgcc |
236 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||||| |||| |||| |
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| T |
28237423 |
gatatggaaattgaggatttgaagaaaagcatagatacgctcaaggggcaatccgcag-aaaaggatatggaaattgaggagttgaagatagacgctgca |
28237325 |
T |
|
| Q |
237 |
tttcgctataaagatggttttgataaggccatagaacaagt |
277 |
Q |
| |
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||||||||| ||| ||||||||| ||||||||||||||||| |
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| T |
28237324 |
tttcgctatcaaggtggttttgacaaggccatagaacaagt |
28237284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 28232639 - 28232508
Alignment:
| Q |
102 |
ttgaagaaaagtgtagatatgctcaaggggcaatccg---------atatggaaattgaggatttgaag-aaagtataaatacgctcaatgggcaatccg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||| ||||| || ||| |||||| ||| |||||| |
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| T |
28232639 |
ttgaagaaaagtgtagatatgctcaaggggctatccgctgcgaaggatgtggaaattgaggacttgaaggaaagtgtagatatgctcaaggggaaatccg |
28232540 |
T |
|
| Q |
192 |
cagcaaaaggatatggaaattgaggatttgaag |
224 |
Q |
| |
|
|||| || |||||| ||||||||||| |||||| |
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|
| T |
28232539 |
cagcgaa-ggatatagaaattgaggaattgaag |
28232508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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