View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12466_high_5 (Length: 276)
Name: NF12466_high_5
Description: NF12466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12466_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 35341802 - 35341601
Alignment:
| Q |
18 |
cataggggttacgttgtcttttgctctcctgtgcagcggacaaaaacttgtcatccaattaagcgggttacaaatttcgggagacttgtccagtgctcca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35341802 |
cataggggttacgttgtcttttgctctcctgtccagcggacaaaaacttgtcctccaattaagcgggttacaaatttcgggagacttgtccagtgctccg |
35341703 |
T |
|
| Q |
118 |
ctactgnnnnnnnncttctgttccattgttatcttttggatcaaacaccgcataacttttattgttctgtcctgtcctctatattttaacaaatcaaaca |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35341702 |
ctactgtttttg---ttctgttccattgttatcttttggatcaaacaccgcacaacttttattgttctgtcctgtcctctatattttaataaatcaaacg |
35341606 |
T |
|
| Q |
218 |
catcc |
222 |
Q |
| |
|
||||| |
|
|
| T |
35341605 |
catcc |
35341601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 10420712 - 10420906
Alignment:
| Q |
18 |
cataggggttacgttgtcttttgctctcctgtgcagcggacaaaaacttgtcatccaattaagcgggttacaaatttcgggagacttgtccagtgctcca |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10420712 |
cataggggctacgttgtcttttgctctcctgtccagcggacaaaaacttgtcctccaattaagcgggttacaaatttcgggagacttgtccggtgctccg |
10420811 |
T |
|
| Q |
118 |
ctactgnnnnnnnncttctgttccattgttatcttttggatcaaacaccgcataacttttattgttctgtcctgtcctctatattttaacaaatcaaa |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10420812 |
gtactgtttttg---ttctgttccattgttatcttttggatcaaacactgcacaatttttattgttctgtcatgtcctctatattttaacaaatcaaa |
10420906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 44184882 - 44185075
Alignment:
| Q |
18 |
cataggggttacgttgtcttttgctctcctgtgcagcggacaaaaacttgtcatccaattaagcgggttacaaatttcgggagacttgtccagtgctcca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
44184882 |
cataggggttacgttgtcttttgctctcctgtccagcggacaaaaacttgtcctccaattaagcgggttacaaatttcagtagacttgtccagtgctccg |
44184981 |
T |
|
| Q |
118 |
ctactgnnnnnnnncttctgttccattgttatcttttggatcaaacaccgcataacttttattgttctgtcctgtcctctatattttaacaaatcaaa |
215 |
Q |
| |
|
||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
44184982 |
ctattgtttttg---ttctattccattgttatcttttggatcaaacaccgcacaacttttattgttctgtactgt-ttctatattttaacaaatcaaa |
44185075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 39788359 - 39788397
Alignment:
| Q |
178 |
attgttctgtcctgtcctctatattttaacaaatcaaac |
216 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
39788359 |
attgttctgtcctgtcctttattttttaacaaatcaaac |
39788397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 34402955 - 34402995
Alignment:
| Q |
179 |
ttgttctgtcctgtcctctatattttaacaaatcaaacaca |
219 |
Q |
| |
|
|||||||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
34402955 |
ttgttctgtcttgtcctccattttttaacaaatcaaacaca |
34402995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University