View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12466_low_1 (Length: 322)

Name: NF12466_low_1
Description: NF12466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12466_low_1
NF12466_low_1
[»] chr4 (1 HSPs)
chr4 (1-306)||(20020153-20020458)
[»] chr3 (24 HSPs)
chr3 (258-306)||(4142521-4142569)
chr3 (258-306)||(4158331-4158379)
chr3 (169-211)||(1898132-1898174)
chr3 (169-211)||(1907578-1907620)
chr3 (173-211)||(1941034-1941072)
chr3 (172-220)||(12132618-12132666)
chr3 (173-211)||(1891525-1891563)
chr3 (169-211)||(2697205-2697247)
chr3 (173-211)||(2931470-2931508)
chr3 (173-210)||(1937439-1937476)
chr3 (175-211)||(1004034-1004070)
chr3 (175-211)||(1022031-1022067)
chr3 (258-306)||(3754219-3754267)
chr3 (167-218)||(988939-988990)
chr3 (172-215)||(13479162-13479205)
chr3 (166-220)||(955920-955974)
chr3 (173-211)||(968233-968271)
chr3 (172-210)||(2458936-2458974)
chr3 (259-305)||(12132708-12132754)
chr3 (174-203)||(13497789-13497818)
chr3 (173-209)||(1931617-1931653)
chr3 (258-306)||(3745621-3745669)
chr3 (172-224)||(9496898-9496950)
chr3 (174-202)||(13526170-13526198)
[»] scaffold0200 (1 HSPs)
scaffold0200 (169-211)||(1252-1294)
[»] chr8 (2 HSPs)
chr8 (173-211)||(31144857-31144895)
chr8 (173-220)||(19727418-19727465)
[»] chr5 (10 HSPs)
chr5 (173-211)||(23754494-23754532)
chr5 (173-211)||(23774528-23774566)
chr5 (173-211)||(23819949-23819987)
chr5 (173-211)||(23861481-23861519)
chr5 (169-211)||(41973944-41973986)
chr5 (173-211)||(23691515-23691553)
chr5 (174-203)||(20292560-20292589)
chr5 (174-203)||(20301008-20301037)
chr5 (174-203)||(20305421-20305450)
chr5 (174-203)||(20309825-20309854)
[»] chr7 (1 HSPs)
chr7 (172-220)||(1078657-1078705)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 20020458 - 20020153
Alignment:
Q  1 aattccttctcaagtcatatacactccactccgttttcaccgacgacgtaaccaccgacgtcatgcatctcagctttccttccaccagtttttatctacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20020458 aattccttctcaagtcatatacactccactccgttttcaccgacgacgtaaccaccgacgtcatgcatctcagctttccttccaccagtttttatctacc 20020359  T
Q  101 ttccattgttgcctcttgcaacggtatcctttgtattgccgactttaaccaaacttcttctattcatgttctattgtggaacccttccattagaaaattc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20020358 ttccattgttgcctcttgcaacggtatcctttgtattgccgacttataccaaacttcttctattcatgttctattgtggaacccttccattagaaaattc 20020259  T
Q  201 aaggaattgccacttcttgagaaggcaatcggtcacgttattaagctcacatctggctttggctttggctatgattcttcaacggacaattacaaggtgg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20020258 aaggaattgccacttcttgagaaggcaatcggtcacgttattaacctcacatccggctttggctttggctatgattcttcaacggacaattacaaggtgg 20020159  T
Q  301 ttgttg 306  Q
    ||||||    
T  20020158 ttgttg 20020153  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 4142569 - 4142521
Alignment:
Q  258 tttggctttggctatgattcttcaacggacaattacaaggtggttgttg 306  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  4142569 tttggctttggctatgattcttcaaaggataattacaaggtggttgttg 4142521  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 4158379 - 4158331
Alignment:
Q  258 tttggctttggctatgattcttcaacggacaattacaaggtggttgttg 306  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  4158379 tttggctttggctatgattcttcaaaggataattacaaggtggttgttg 4158331  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 1898174 - 1898132
Alignment:
Q  169 ttctattgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  1898174 ttctattgtggaacccttccattcgaaaattcaaggaattgcc 1898132  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 1907620 - 1907578
Alignment:
Q  169 ttctattgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  1907620 ttctattgtggaacccttccattcgaaaattcaaggaattgcc 1907578  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 1941072 - 1941034
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1941072 attgtggaacccttccattagaaaattcaaggaattgcc 1941034  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 12132618 - 12132666
Alignment:
Q  172 tattgtggaacccttccattagaaaattcaaggaattgccacttcttga 220  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  12132618 tattgttgaacccttccattagaaaattcaaggagttgccccttcttga 12132666  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 1891563 - 1891525
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  1891563 attgtggaacccttccattagaaaatttaaggaattgcc 1891525  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 2697247 - 2697205
Alignment:
Q  169 ttctattgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  2697247 ttctattgtggaacccttcaattagaaaatttaaggaattgcc 2697205  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 2931470 - 2931508
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2931470 attgtggaacccttccattcgaaaattcaaggaattgcc 2931508  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 1937476 - 1937439
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgc 210  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  1937476 attgtggaatccttccattagaaaattcaaggaattgc 1937439  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 1004034 - 1004070
Alignment:
Q  175 tgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1004034 tgtggaacccttccattagaaaattaaaggaattgcc 1004070  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 1022031 - 1022067
Alignment:
Q  175 tgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1022031 tgtggaacccttccattagaaaattaaaggaattgcc 1022067  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 3754219 - 3754267
Alignment:
Q  258 tttggctttggctatgattcttcaacggacaattacaaggtggttgttg 306  Q
    |||||||||||||||||||||| ||  || |||||||||||||||||||    
T  3754219 tttggctttggctatgattctttaaacgataattacaaggtggttgttg 3754267  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 988939 - 988990
Alignment:
Q  167 tgttctattgtggaacccttccattagaaaattcaaggaattgccacttctt 218  Q
    ||||| |||||||||||||||||||||||||   ||||||||||| ||||||    
T  988939 tgttcgattgtggaacccttccattagaaaagataaggaattgccccttctt 988990  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 13479162 - 13479205
Alignment:
Q  172 tattgtggaacccttccattagaaaattcaaggaattgccactt 215  Q
    |||||||||||||||||||||  |||||||||||||| ||||||    
T  13479162 tattgtggaacccttccattaataaattcaaggaattaccactt 13479205  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 955920 - 955974
Alignment:
Q  166 atgttctattgtggaacccttccattagaaaattcaaggaattgccacttcttga 220  Q
    |||||| |||||| |||||||| ||||||||||||||||| ||||| | ||||||    
T  955920 atgttcgattgtgtaacccttctattagaaaattcaaggatttgccccctcttga 955974  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 968233 - 968271
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  968233 attgtggaatccttccattagaaaattcaaagaattgcc 968271  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 2458936 - 2458974
Alignment:
Q  172 tattgtggaacccttccattagaaaattcaaggaattgc 210  Q
    |||||||||| || |||||||||||||||||||||||||    
T  2458936 tattgtggaatccatccattagaaaattcaaggaattgc 2458974  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 12132708 - 12132754
Alignment:
Q  259 ttggctttggctatgattcttcaacggacaattacaaggtggttgtt 305  Q
    |||||||||||||||||||||  || || ||||||||||||||||||    
T  12132708 ttggctttggctatgattcttgtactgataattacaaggtggttgtt 12132754  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 13497789 - 13497818
Alignment:
Q  174 ttgtggaacccttccattagaaaattcaag 203  Q
    ||||||||||||||||||||||||||||||    
T  13497789 ttgtggaacccttccattagaaaattcaag 13497818  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 1931653 - 1931617
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattg 209  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  1931653 attgtggaatccttccattcgaaaattcaaggaattg 1931617  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 3745621 - 3745669
Alignment:
Q  258 tttggctttggctatgattcttcaacggacaattacaaggtggttgttg 306  Q
    |||||||| || ||| ||||||||| ||| |||||||||||||||||||    
T  3745621 tttggcttcggttataattcttcaaaggataattacaaggtggttgttg 3745669  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 9496950 - 9496898
Alignment:
Q  172 tattgtggaacccttccattagaaaattcaaggaattgccacttcttgagaag 224  Q
    ||||||||||||||||| | |||||||| || || ||||||||| ||||||||    
T  9496950 tattgtggaacccttccgtaagaaaatttaaagagttgccactttttgagaag 9496898  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 13526170 - 13526198
Alignment:
Q  174 ttgtggaacccttccattagaaaattcaa 202  Q
    |||||||||||||||||||||||||||||    
T  13526170 ttgtggaacccttccattagaaaattcaa 13526198  T

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Target: scaffold0200 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 1294 - 1252
Alignment:
Q  169 ttctattgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  1294 ttctattgtggaacccttccactagaaaattcaaggaattgcc 1252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 31144895 - 31144857
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31144895 attgtggaacccttccattagaaaattcaaggaattgcc 31144857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 19727418 - 19727465
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgccacttcttga 220  Q
    |||||||||||||||| |||||||||||||||| ||||| | ||||||    
T  19727418 attgtggaacccttccgttagaaaattcaaggacttgccccctcttga 19727465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 23754532 - 23754494
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23754532 attgtggaacccttccattagaaaattcaaggaattgcc 23754494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 23774566 - 23774528
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23774566 attgtggaacccttccattagaaaattcaaggaattgcc 23774528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 23819987 - 23819949
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23819987 attgtggaacccttccattagaaaattcaaggaattgcc 23819949  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 23861519 - 23861481
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23861519 attgtggaacccttccattagaaaattcaaggaattgcc 23861481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 41973986 - 41973944
Alignment:
Q  169 ttctattgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  41973986 ttctattgtggaacccttccactagaaaattcaaggaattgcc 41973944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 23691515 - 23691553
Alignment:
Q  173 attgtggaacccttccattagaaaattcaaggaattgcc 211  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  23691515 attgtggaacccttccattagaaaattcattgaattgcc 23691553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 20292560 - 20292589
Alignment:
Q  174 ttgtggaacccttccattagaaaattcaag 203  Q
    ||||||||||||||||||||||||||||||    
T  20292560 ttgtggaacccttccattagaaaattcaag 20292589  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 20301008 - 20301037
Alignment:
Q  174 ttgtggaacccttccattagaaaattcaag 203  Q
    ||||||||||||||||||||||||||||||    
T  20301008 ttgtggaacccttccattagaaaattcaag 20301037  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 20305421 - 20305450
Alignment:
Q  174 ttgtggaacccttccattagaaaattcaag 203  Q
    ||||||||||||||||||||||||||||||    
T  20305421 ttgtggaacccttccattagaaaattcaag 20305450  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 20309825 - 20309854
Alignment:
Q  174 ttgtggaacccttccattagaaaattcaag 203  Q
    ||||||||||||||||||||||||||||||    
T  20309825 ttgtggaacccttccattagaaaattcaag 20309854  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 1078705 - 1078657
Alignment:
Q  172 tattgtggaacccttccattagaaaattcaaggaattgccacttcttga 220  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  1078705 tattgttgaacccttccattagaaaattcaaggagttgccccttcttga 1078657  T

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