View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12466_low_3 (Length: 297)
Name: NF12466_low_3
Description: NF12466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12466_low_3 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 10648236 - 10647953
Alignment:
| Q |
1 |
ttgatcatatttattgtgtgtaacgtgcatcatatattggagaatgattaggcgggggataatatatatgaattgggacagtggaggccaattacgaggc |
100 |
Q |
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| T |
10648236 |
ttgatcatatttattgtgtgtaacatgcatcatatattggagaatgattcggcgggggataatatatatgaattgggacagtggaggccaattacgaggc |
10648137 |
T |
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| Q |
101 |
cttttgggtgattcacaaaatctatatgcctgttgtggaactcctgagtgacttgtgttgatccctcgatgtcaatttcaaaagttgagcaaccttgact |
200 |
Q |
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| T |
10648136 |
cttgtgggtgattcacaaaatctatatgcctgttgtggaactcctgagtgacttgtgttgatccctcgatgtcaattttgaaagttgagcaaccttgact |
10648037 |
T |
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| Q |
201 |
agtcacccaacaatattttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcaca |
284 |
Q |
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| T |
10648036 |
agtcacccaacaatattttactagtgaatgtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcaca |
10647953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 277
Target Start/End: Original strand, 8324 - 8552
Alignment:
| Q |
54 |
gggggataatatatatgaattgggacagtggaggccaattacgaggccttttgggtgattcacaaaatctatatgcctgttgtggaactcctgagtgact |
153 |
Q |
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| T |
8324 |
gggggatagtaaatatgaattgggatggtggaggccaattactgggccttgagggtgatttacgaa-tctatatgtctggtgtggaactcctatgtgact |
8422 |
T |
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| Q |
154 |
tgtgttgatccctcgatgtc------aatttcaaaagttgagcaaccttgactagtcacccaacaatattttactagtgaaagtgtgaaacaccgaagtt |
247 |
Q |
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| T |
8423 |
cgtgttgatcccacgatgtcgggacaaacttataaagctggacagccctgactaatcacctgacaatattttactagtgagaatgtaaagcatcgaagtc |
8522 |
T |
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| Q |
248 |
aactagtgaggtgttacttcaatagagacg |
277 |
Q |
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| T |
8523 |
aactagtgaggtgttgcttcaatagagacg |
8552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 12178890 - 12178971
Alignment:
| Q |
196 |
tgactagtcacccaacaatattttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacg |
277 |
Q |
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| T |
12178890 |
tgactagtcacctgacaatattttactagtgagagtgtaaagcatcgaagttaaccagtgaggtgttgcttcaatagagacg |
12178971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 8680692 - 8680762
Alignment:
| Q |
210 |
acaatattttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttg |
280 |
Q |
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| T |
8680692 |
acaatattttactagtgagagtgtcaagcaccgaagtaaactagtatggtgttccttcaacaaagacgttg |
8680762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 10301393 - 10301272
Alignment:
| Q |
50 |
aggcgggg-gataatatatatgaattgggacagtggaggccaattacgaggccttttgggtgattcacaaaatctatatgcctgttgtggaactcctgag |
148 |
Q |
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| T |
10301393 |
aggcggggagatagtagatatgaattgggatggtggaggccaattacggggcc--ttaggtgatctac-aaatctatatgtctggtctgaaactcctagg |
10301297 |
T |
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| Q |
149 |
tgacttgtgttgatccctcgatgtc |
173 |
Q |
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| T |
10301296 |
tgactcgtgctgatcccacgatgtc |
10301272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 10301226 - 10301166
Alignment:
| Q |
215 |
attttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagaga |
275 |
Q |
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| T |
10301226 |
attttactaatgaaagtgtgaagcaccgaagtcaacccgtgagatgttgcttcaaaagaga |
10301166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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