View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12466_low_4 (Length: 293)

Name: NF12466_low_4
Description: NF12466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12466_low_4
NF12466_low_4
[»] chr7 (16 HSPs)
chr7 (158-285)||(38265237-38265364)
chr7 (157-285)||(35109696-35109824)
chr7 (161-285)||(16059356-16059480)
chr7 (157-276)||(245263-245382)
chr7 (157-272)||(37095209-37095324)
chr7 (161-276)||(38405157-38405272)
chr7 (157-267)||(34721857-34721967)
chr7 (157-285)||(41151177-41151306)
chr7 (157-285)||(21577097-21577225)
chr7 (157-276)||(45278466-45278585)
chr7 (162-285)||(12472126-12472249)
chr7 (161-285)||(18116947-18117071)
chr7 (163-285)||(11216774-11216896)
chr7 (161-276)||(48176413-48176529)
chr7 (157-276)||(23028697-23028816)
chr7 (157-258)||(28407540-28407637)
[»] chr3 (22 HSPs)
chr3 (150-285)||(7417803-7417938)
chr3 (157-285)||(8400860-8400988)
chr3 (157-276)||(50823712-50823831)
chr3 (157-276)||(50852029-50852148)
chr3 (150-276)||(22855901-22856027)
chr3 (161-285)||(34824561-34824685)
chr3 (157-285)||(35198770-35198898)
chr3 (157-276)||(52545335-52545454)
chr3 (161-285)||(43334057-43334181)
chr3 (150-261)||(22371721-22371832)
chr3 (157-243)||(37330606-37330692)
chr3 (161-276)||(55468013-55468129)
chr3 (157-243)||(37454743-37454829)
chr3 (158-243)||(30534902-30534987)
chr3 (157-267)||(19872482-19872592)
chr3 (177-275)||(29635883-29635981)
chr3 (157-231)||(25910665-25910739)
chr3 (196-264)||(48077979-48078047)
chr3 (162-248)||(42876257-42876343)
chr3 (164-276)||(50726003-50726115)
chr3 (164-276)||(50786733-50786845)
chr3 (157-201)||(773666-773710)
[»] chr2 (24 HSPs)
chr2 (157-285)||(45136969-45137097)
chr2 (157-276)||(40156054-40156173)
chr2 (157-267)||(36380131-36380241)
chr2 (157-273)||(10745231-10745347)
chr2 (157-285)||(17136392-17136520)
chr2 (157-276)||(33066604-33066723)
chr2 (157-275)||(44650408-44650526)
chr2 (157-276)||(25987660-25987780)
chr2 (157-285)||(36836328-36836456)
chr2 (157-276)||(5039434-5039553)
chr2 (157-267)||(558438-558548)
chr2 (169-285)||(6672804-6672920)
chr2 (157-285)||(21637902-21638030)
chr2 (157-260)||(2754050-2754153)
chr2 (160-281)||(30372682-30372803)
chr2 (157-285)||(26690159-26690287)
chr2 (157-257)||(21487181-21487282)
chr2 (157-285)||(3200886-3201014)
chr2 (157-285)||(7860145-7860273)
chr2 (157-285)||(2357075-2357202)
chr2 (150-257)||(13047148-13047252)
chr2 (157-207)||(2098825-2098875)
chr2 (169-276)||(4553569-4553677)
chr2 (220-275)||(20961496-20961551)
[»] chr4 (24 HSPs)
chr4 (158-285)||(36192546-36192673)
chr4 (161-276)||(51066507-51066622)
chr4 (161-285)||(46494401-46494525)
chr4 (157-285)||(50905753-50905881)
chr4 (157-264)||(30970383-30970490)
chr4 (157-267)||(7173584-7173694)
chr4 (157-267)||(39863777-39863887)
chr4 (157-261)||(29576444-29576548)
chr4 (157-285)||(32139169-32139297)
chr4 (157-285)||(51713964-51714092)
chr4 (157-262)||(55231715-55231820)
chr4 (157-275)||(2570216-2570334)
chr4 (157-230)||(22304090-22304163)
chr4 (188-276)||(8740462-8740550)
chr4 (161-264)||(41523423-41523526)
chr4 (157-248)||(676770-676861)
chr4 (160-248)||(51279035-51279123)
chr4 (157-264)||(47626992-47627099)
chr4 (161-276)||(2294719-2294828)
chr4 (157-257)||(4080551-4080651)
chr4 (162-226)||(37990599-37990663)
chr4 (161-223)||(23084468-23084530)
chr4 (188-276)||(50399672-50399760)
chr4 (187-263)||(22423403-22423479)
[»] scaffold0021 (1 HSPs)
scaffold0021 (157-285)||(107691-107818)
[»] chr8 (20 HSPs)
chr8 (157-285)||(11404006-11404134)
chr8 (157-285)||(19723316-19723444)
chr8 (161-272)||(17095568-17095679)
chr8 (157-265)||(32296638-32296746)
chr8 (158-285)||(4840145-4840272)
chr8 (157-260)||(22711539-22711642)
chr8 (157-274)||(29767204-29767319)
chr8 (161-285)||(28739564-28739688)
chr8 (157-257)||(36261679-36261779)
chr8 (157-275)||(11610295-11610413)
chr8 (157-278)||(30682851-30682971)
chr8 (178-261)||(21355004-21355087)
chr8 (191-275)||(24475029-24475113)
chr8 (157-257)||(43288105-43288205)
chr8 (161-244)||(11909426-11909509)
chr8 (157-245)||(41553330-41553418)
chr8 (157-218)||(27879559-27879620)
chr8 (157-218)||(28019740-28019801)
chr8 (214-285)||(27881044-27881115)
chr8 (214-285)||(28021225-28021296)
[»] chr1 (16 HSPs)
chr1 (161-285)||(30054445-30054569)
chr1 (159-276)||(30370061-30370178)
chr1 (157-285)||(20014463-20014591)
chr1 (157-285)||(45324011-45324139)
chr1 (169-276)||(21090129-21090236)
chr1 (158-265)||(22024128-22024235)
chr1 (157-285)||(12025186-12025314)
chr1 (157-261)||(14498078-14498182)
chr1 (159-276)||(30850841-30850958)
chr1 (158-276)||(33763254-33763372)
chr1 (169-246)||(35371756-35371833)
chr1 (157-285)||(4573384-4573512)
chr1 (157-264)||(33762539-33762646)
chr1 (170-276)||(44438562-44438668)
chr1 (161-230)||(35618035-35618104)
chr1 (158-218)||(17015192-17015252)
[»] chr6 (9 HSPs)
chr6 (157-267)||(20685348-20685458)
chr6 (157-285)||(35163749-35163877)
chr6 (158-285)||(19686827-19686954)
chr6 (157-267)||(17948703-17948813)
chr6 (169-263)||(15070152-15070246)
chr6 (157-285)||(2711739-2711861)
chr6 (157-275)||(14505524-14505640)
chr6 (187-272)||(24336633-24336718)
chr6 (236-285)||(14496357-14496406)
[»] chr5 (8 HSPs)
chr5 (157-285)||(17064328-17064456)
chr5 (161-276)||(20983006-20983121)
chr5 (17-92)||(31640493-31640568)
chr5 (157-285)||(37976551-37976683)
chr5 (157-257)||(41910858-41910957)
chr5 (93-142)||(31640331-31640380)
chr5 (157-273)||(5009416-5009531)
chr5 (163-225)||(31673894-31673956)
[»] scaffold0691 (1 HSPs)
scaffold0691 (182-276)||(6993-7087)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 158 - 285
Target Start/End: Original strand, 38265237 - 38265364
Alignment:
Q  158 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 257  Q
    |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  38265237 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 38265336  T
Q  258 gcactagcggagctcgaacacaggttct 285  Q
    |||||||||| |||||||| ||||||||    
T  38265337 gcactagcggggctcgaacccaggttct 38265364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 35109824 - 35109696
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  35109824 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 35109725  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    |||||||| || |||||||| | ||||||    
T  35109724 ggcactagtggggctcgaacccgggttct 35109696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 16059356 - 16059480
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| || ||||||||    
T  16059356 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggca 16059455  T
Q  261 ctagcggagctcgaacacaggttct 285  Q
    ||||||| |||||||| | ||||||    
T  16059456 ctagcggggctcgaacccgggttct 16059480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 157 - 276
Target Start/End: Original strand, 245263 - 245382
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||     
T  245263 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccctccaag 245362  T
Q  257 ggcactagcggagctcgaac 276  Q
    ||||||||||| ||||||||    
T  245363 ggcactagcggggctcgaac 245382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 157 - 272
Target Start/End: Original strand, 37095209 - 37095324
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  37095209 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 37095308  T
Q  257 ggcactagcggagctc 272  Q
    | ||||||||| ||||    
T  37095309 gacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 38405157 - 38405272
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38405157 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccctccaaaggca 38405256  T
Q  261 ctagcggagctcgaac 276  Q
    ||||||  ||||||||    
T  38405257 ctagcgaggctcgaac 38405272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 34721967 - 34721857
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| || ||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  34721967 aaaattttagggtgaggggatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 34721868  T
Q  257 ggcactagcgg 267  Q
    |||||||||||    
T  34721867 ggcactagcgg 34721857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 41151306 - 41151177
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttac-aaatataattacatttacctcactccaa 255  Q
    |||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||  |||||||||||||||| ||||||    
T  41151306 aaaaatttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctccctccaa 41151207  T
Q  256 aggcactagcggagctcgaacacaggttct 285  Q
    || ||||||||| |||||||| | ||||||    
T  41151206 agacactagcggggctcgaacccgggttct 41151177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 21577097 - 21577225
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||  || ||||||||||||| |||||||    
T  21577097 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccctccaaa 21577196  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    |||| ||| || |||||||| | ||||||    
T  21577197 ggcattagtggggctcgaacccgggttct 21577225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 45278585 - 45278466
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| |||||||||||||  ||||||||||| ||||||||| |||||| | |||||||||||||||| |||||||||||||| || || ||||    
T  45278585 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcccttcaaa 45278486  T
Q  257 ggcactagcggagctcgaac 276  Q
    ||||||||||| ||||||||    
T  45278485 ggcactagcggggctcgaac 45278466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 12472249 - 12472126
Alignment:
Q  162 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 261  Q
    |||||| ||||||||||||  |||||||||||  |||||||||||||| ||||||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  12472249 tttagggtgaggggatggtaccccagtccaagacagggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcac 12472150  T
Q  262 tagcggagctcgaacacaggttct 285  Q
    ||| || |||||||| | ||||||    
T  12472149 tagtggggctcgaacccgggttct 12472126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 18116947 - 18117071
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||||||||||||| |||||||||||| |||||||| |||||  |||||||||||| ||||||  |||||||||||||||| ||| |||||||    
T  18116947 ttttagggtgaggggatggtgccccagtccaaggcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggca 18117046  T
Q  261 ctagcggagctcgaacacaggttct 285  Q
    ||||||  |||||||| | ||||||    
T  18117047 ctagcgtggctcgaacccgggttct 18117071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 11216896 - 11216774
Alignment:
Q  163 ttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcact 262  Q
    ||||| |||||| ||| || || ||||||| |||| ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||||    
T  11216896 ttagggtgagggaatgatgccctagtccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcact 11216797  T
Q  263 agcggagctcgaacacaggttct 285  Q
    |  || |||||||| | ||||||    
T  11216796 aatggggctcgaacccgggttct 11216774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 48176529 - 48176413
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggt-agggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggc 259  Q
    ||||||| ||||||||||||| ||||||||||||  |||||| |||||| |||||||| | ||||||||||  || |||||||||||||  |||||||||    
T  48176529 ttttagggtgaggggatggtgccccagtccaaggggagggaaaaccttccggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggc 48176430  T
Q  260 actagcggagctcgaac 276  Q
    |||||||| ||||||||    
T  48176429 actagcggggctcgaac 48176413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 23028816 - 23028697
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| |||| |||||||| | ||||| |||||||||||| |||||||| ||||| | |||||| |||  ||||||||||||| || ||| |||    
T  23028816 aaaattttaggatgagaggatggtgtctcagtctaaggtagggaaggccttcgggttcaaaaaacacttataaaggtaattacatttacatccctctaaa 23028717  T
Q  257 ggcactagcggagctcgaac 276  Q
    |||| ||| |||| ||||||    
T  23028716 ggcattagaggagttcgaac 23028697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 258
Target Start/End: Complemental strand, 28407637 - 28407540
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||| |||||||   |    ||||||||||||||||||||||||||||  || ||||||||||||| ||| |||    
T  28407637 aaaattttagggtgaggggatggtgccccaatccaaggcttg----accttcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaa 28407542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 150 - 285
Target Start/End: Complemental strand, 7417938 - 7417803
Alignment:
Q  150 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 249  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||     
T  7417938 ggtaaggaaaattttagggtgaggggatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 7417839  T
Q  250 ctccaaaggcactagcggagctcgaacacaggttct 285  Q
    |||||||||||||||||| |||||||| | ||||||    
T  7417838 ctccaaaggcactagcggggctcgaacccgggttct 7417803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 8400988 - 8400860
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  8400988 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 8400889  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    ||||||||||| |||||||| | ||||||    
T  8400888 ggcactagcggggctcgaacccgggttct 8400860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 50823831 - 50823712
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  50823831 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 50823732  T
Q  257 ggcactagcggagctcgaac 276  Q
    ||||||| |||  |||||||    
T  50823731 ggcactaacgggactcgaac 50823712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 157 - 276
Target Start/End: Original strand, 50852029 - 50852148
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  50852029 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 50852128  T
Q  257 ggcactagcggagctcgaac 276  Q
    ||||||| |||  |||||||    
T  50852129 ggcactaacgggactcgaac 50852148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 22856027 - 22855901
Alignment:
Q  150 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 249  Q
    |||||||||||||||||| |||||||||||||  ||||||||||| |||||||||||| ||||| ||||||||||||||||  ||||||||||||||||     
T  22856027 ggtaaggaaaattttagggtgaggggatggtgctccagtccaaggcagggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctcc 22855928  T
Q  250 ctccaaaggcactagcggagctcgaac 276  Q
    |||||||| ||||||||| ||||||||    
T  22855927 ctccaaagacactagcggggctcgaac 22855901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 161 - 285
Target Start/End: Complemental strand, 34824685 - 34824561
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||||    
T  34824685 ttttagggtgaggggatggtgccccagtccaaggccgggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggca 34824586  T
Q  261 ctagcggagctcgaacacaggttct 285  Q
    ||| |||  ||||||| ||||||||    
T  34824585 ctaacgggactcgaactcaggttct 34824561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 35198898 - 35198770
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| || ||||    
T  35198898 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaa 35198799  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    |||| ||| || |||||||| | ||||||    
T  35198798 ggcattagtggggctcgaacccgggttct 35198770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 52545454 - 52545335
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||  |||||||||  || ||||||||||||| ||  |||    
T  52545454 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagactacttacaaaagtatttacatttacctccctttaaa 52545355  T
Q  257 ggcactagcggagctcgaac 276  Q
    ||||||||||| ||||||||    
T  52545354 ggcactagcggggctcgaac 52545335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 43334057 - 43334181
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||||||||||||  |||||||||||| |||||||||||||||||||||| ||||||||||||  || ||||||||||||| |||| ||| ||    
T  43334057 ttttagggtgaggggatggtaccccagtccaaggcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctccctcccaagaca 43334156  T
Q  261 ctagcggagctcgaacacaggttct 285  Q
    ||||||| |||||||| | ||||||    
T  43334157 ctagcggggctcgaactcgggttct 43334181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 22371721 - 22371832
Alignment:
Q  150 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 249  Q
    ||||||| |||||||||| ||||||||||||| ||||||| || | |||||||| ||||||| ||||||||||||||||||  ||||||||||||||||     
T  22371721 ggtaaggtaaattttagggtgaggggatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctcc 22371820  T
Q  250 ctccaaaggcac 261  Q
    ||||||||||||    
T  22371821 ctccaaaggcac 22371832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 37330606 - 37330692
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 243  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||  |||||||||||    
T  37330606 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 55468129 - 55468013
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcggg-ctcaaagagcacttacaaatataattacatttacctcactccaaaggc 259  Q
    ||||||| ||||||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||  || ||||||||||||| ||||||| ||    
T  55468129 ttttagggtgaggggatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgc 55468030  T
Q  260 actagcggagctcgaac 276  Q
    | ||| || ||||||||    
T  55468029 attagtggggctcgaac 55468013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 37454743 - 37454829
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 243  Q
    ||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  37454743 aaaattttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 30534902 - 30534987
Alignment:
Q  158 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 243  Q
    |||||||||| ||||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||    
T  30534902 aaattttagggtgaggggatggtaccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 19872482 - 19872592
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||||||||||  |||||||| |||||||||  ||||||  |||||||  |||||||    
T  19872482 aaaattttaggatgaggggatggtgccccagtccaagacagggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcctccaaa 19872581  T
Q  257 ggcactagcgg 267  Q
    ||||| |||||    
T  19872582 ggcacaagcgg 19872592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 275
Target Start/End: Complemental strand, 29635981 - 29635883
Alignment:
Q  177 tggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 275  Q
    ||||| |||| ||||||| ||||||||| |||||||| ||||||||||||||||  |||||||||||||||| || ||||||||||||||  |||||||    
T  29635981 tggtgccccactccaaggcagggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctcccttcaaaggcactagcgaggctcgaa 29635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 25910665 - 25910739
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaat 231  Q
    ||||||||||| ||||||||||||| | |||||||||| |||||||| |||||| ||||||||||||||||||||    
T  25910665 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagatcttcggactcaaagagcacttacaaat 25910739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 48077979 - 48078047
Alignment:
Q  196 agggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactag 264  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||    
T  48077979 agggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactag 48078047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 42876343 - 42876257
Alignment:
Q  162 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc 248  Q
    |||||| |||| |||||||| || |||||||| |||||||||| |||  | ||||||||||||||||||  ||||||||||||||||    
T  42876343 tttagggtgagaggatggtgccctagtccaagatagggaagacattcaagttcaaagagcacttacaaaggtaattacatttacctc 42876257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 50726003 - 50726115
Alignment:
Q  164 taggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 263  Q
    |||| ||| ||||||||| |||| ||||| ||||||||||| ||||  |||||| || |||||||||  |||||| ||||||||  |||||||| |||||    
T  50726003 tagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacacta 50726102  T
Q  264 gcggagctcgaac 276  Q
     ||| ||||||||    
T  50726103 acggggctcgaac 50726115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 276
Target Start/End: Complemental strand, 50786845 - 50786733
Alignment:
Q  164 taggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 263  Q
    |||| ||| ||||||||| |||| ||||| ||||||||||| ||||  |||||| || |||||||||  |||||| ||||||||  |||||||| |||||    
T  50786845 tagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacacta 50786746  T
Q  264 gcggagctcgaac 276  Q
     ||| ||||||||    
T  50786745 acggggctcgaac 50786733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 773710 - 773666
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaa 201  Q
    |||||| |||| ||||||||||||| |||||||||||| ||||||    
T  773710 aaaattctagggtgaggggatggtgccccagtccaaggaagggaa 773666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 45136969 - 45137097
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  45136969 aaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 45137068  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    ||||||||||| |||||||| | ||||||    
T  45137069 ggcactagcggggctcgaacccgggttct 45137097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 40156173 - 40156054
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  40156173 aaaattttatggtgaggggatggtgccccagttcaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 40156074  T
Q  257 ggcactagcggagctcgaac 276  Q
    ||||||||||| ||||||||    
T  40156073 ggcactagcggggctcgaac 40156054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 36380131 - 36380241
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||    
T  36380131 aaaattttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccctccaaa 36380230  T
Q  257 ggcactagcgg 267  Q
    |||||||||||    
T  36380231 ggcactagcgg 36380241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 10745231 - 10745347
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||| |||    
T  10745231 aaaattttagggtgaggggatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccctctaaa 10745330  T
Q  257 ggcactagcggagctcg 273  Q
    ||||||||||| |||||    
T  10745331 ggcactagcggggctcg 10745347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 17136520 - 17136392
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  17136520 aaaattttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 17136421  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    ||||||| ||| |||||||| | ||||||    
T  17136420 ggcactaacggggctcgaacccgggttct 17136392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 33066723 - 33066604
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  33066723 aaaattttaggatgaggggatggtgccccagtccaaggtagagaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaa 33066624  T
Q  257 ggcactagcggagctcgaac 276  Q
    | |||||| | |||||||||    
T  33066623 gacactagtgaagctcgaac 33066604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 44650526 - 44650408
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| ||| |||||||| |||||||| |||||| |||||||||||||||||||  |||||||||||||||| |||||||    
T  44650526 aaaattttagggtgaggggatggtgccccggtccaaggcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaa 44650427  T
Q  257 ggcactagcggagctcgaa 275  Q
    ||||||| |||||||||||    
T  44650426 ggcactaacggagctcgaa 44650408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 157 - 276
Target Start/End: Original strand, 25987660 - 25987780
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaa-gaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaa 255  Q
    ||||||||||| ||||||||||||| ||||| |||||| |||||| ||||||||| |||||||||||||||||||  |||||||||||||||| ||||||    
T  25987660 aaaattttagggtgaggggatggtgccccagaccaaggcagggaaagaccttcggactcaaagagcacttacaaaggtaattacatttacctccctccaa 25987759  T
Q  256 aggcactagcggagctcgaac 276  Q
    |||||||||||| ||||||||    
T  25987760 aggcactagcggggctcgaac 25987780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 36836328 - 36836456
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||| | ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  36836328 aaaattttaaggtgaggggatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36836427  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    ||||| |||||  ||||||| | ||||||    
T  36836428 ggcaccagcgggactcgaactcgggttct 36836456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 5039553 - 5039434
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||  ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||  ||||||| |||||||| ||| |||    
T  5039553 aaaattttagagtgaggggatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctccctctaaa 5039454  T
Q  257 ggcactagcggagctcgaac 276  Q
     |||||||||||||||||||    
T  5039453 agcactagcggagctcgaac 5039434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 558438 - 558548
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||  ||||||||||||||||||||  |||||||||||||||| |||||||    
T  558438 aaaattttagggtgaggggatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccctccaaa 558537  T
Q  257 ggcactagcgg 267  Q
    |||||||||||    
T  558538 ggcactagcgg 558548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 285
Target Start/End: Original strand, 6672804 - 6672920
Alignment:
Q  169 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcgga 268  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||  |||||||||||||||| ||||||||||||||||||     
T  6672804 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcggg 6672903  T
Q  269 gctcgaacacaggttct 285  Q
    ||| |||| | ||||||    
T  6672904 gcttgaacccgggttct 6672920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 21638030 - 21637902
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| || ||||||||| || ||||||||| ||||||||||||||||||||||  || ||||||||||||| |||||||    
T  21638030 aaaattttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 21637931  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    ||||||||||| |||| ||| | ||||||    
T  21637930 ggcactagcggggctcaaacccgggttct 21637902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 2754050 - 2754153
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  2754050 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 2754149  T
Q  257 ggca 260  Q
    ||||    
T  2754150 ggca 2754153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 30372682 - 30372803
Alignment:
Q  160 attttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggc 259  Q
    |||||||| |||||| |||||  |||||| ||||| | ||||||||||||||||||||||||||| ||||| ||| |||||||||||||  |||||||||    
T  30372682 attttagggtgagggtatggtaccccagttcaaggcatggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggc 30372781  T
Q  260 actagcggagctcgaacacagg 281  Q
    ||||||||||||||||| ||||    
T  30372782 actagcggagctcgaacccagg 30372803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 26690287 - 26690159
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| | |||||||||| ||||||||||||||  | |||||| ||||||||||  |||||||||||||||| |||||||    
T  26690287 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccctccaaa 26690188  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
     ||||||||||  ||||||| ||| ||||    
T  26690187 agcactagcgggactcgaacccagattct 26690159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 21487282 - 21487181
Alignment:
Q  157 aaaattttaggttgagggg-atggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaa 255  Q
    ||||||||||| ||||||| |||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  21487282 aaaattttaggatgagggggatggtgccccagtctaaggcagggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaa 21487183  T
Q  256 ag 257  Q
    ||    
T  21487182 ag 21487181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 3201014 - 3200886
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    |||||||||||  |||| ||||||| ||||||| |||| || ||||| |||| |||||||||| ||||||||||  |||||||||||||||| |||||||    
T  3201014 aaaattttagggcgaggagatggtgccccagtctaaggcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaa 3200915  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    ||||||||||  |||||||  ||||||||    
T  3200914 ggcactagcgaggctcgaatccaggttct 3200886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 7860145 - 7860273
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    |||||||||||  ||||||||| || | |||||||||| || ||| | ||||||||||||||| ||||||||||| ||  |||||||||||| |||||||    
T  7860145 aaaattttagggagaggggatgatgcctcagtccaaggcagagaaaatcttcgggctcaaagaacacttacaaatgtatgtacatttacctccctccaaa 7860244  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    ||||||||||| |||| ||| ||||||||    
T  7860245 ggcactagcggggctcaaacccaggttct 7860273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 2357075 - 2357202
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| | ||||||||||||  |||||| |||| ||||||   || ||||||||||||| |||||||    
T  2357075 aaaattttagggtgaggggatggtgccccagtccaaggcatggaagaccttcgaactcaaa-agcatttacaatggtatttacatttacctccctccaaa 2357173  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    || ||||| ||| ||||||| | ||||||    
T  2357174 ggtactagtggaactcgaacccgggttct 2357202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 13047148 - 13047252
Alignment:
Q  150 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 249  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| |||||||| ||| |||||||||||||||||   ||  |||||| |||||||||     
T  13047148 ggtaaggtaaattttagggtgaggggatggtgctccagtccaaggcagggaagatctttgggctcaaagagcactt---aaggtaattatatttacctcc 13047244  T
Q  250 ctccaaag 257  Q
    ||||||||    
T  13047245 ctccaaag 13047252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 2098825 - 2098875
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagacctt 207  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  2098825 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 4553569 - 4553677
Alignment:
Q  169 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc-actccaaaggcactagcgg 267  Q
    ||||||||||||| ||||||| |||  || |||||||| ||| ||||||||| |||||||||| || ||| |||||||||  |||||||  ||||||| |    
T  4553569 tgaggggatggtgccccagtctaagacagagaagacctccggactcaaagagtacttacaaatgtatttatatttacctctcctccaaaaacactagctg 4553668  T
Q  268 agctcgaac 276  Q
    | |||||||    
T  4553669 aactcgaac 4553677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 20961551 - 20961496
Alignment:
Q  220 gcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 275  Q
    ||||||||||||  | ||||||||||||| |||||| |||||||||||||||||||    
T  20961551 gcacttacaaatggatttacatttacctccctccaagggcactagcggagctcgaa 20961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 158 - 285
Target Start/End: Complemental strand, 36192673 - 36192546
Alignment:
Q  158 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 257  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||| ||||||||    
T  36192673 aaattttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaag 36192574  T
Q  258 gcactagcggagctcgaacacaggttct 285  Q
    ||||||| || |||||||| | ||||||    
T  36192573 gcactagtggggctcgaacccgggttct 36192546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 51066622 - 51066507
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  51066622 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccctccaaaggca 51066523  T
Q  261 ctagcggagctcgaac 276  Q
    ||||||||||||||||    
T  51066522 ctagcggagctcgaac 51066507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 46494401 - 46494525
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||    
T  46494401 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 46494500  T
Q  261 ctagcggagctcgaacacaggttct 285  Q
    |||| || |||||||| | ||||||    
T  46494501 ctagtggggctcgaacccgggttct 46494525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 50905881 - 50905753
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| |||  |||||||| |||||| ||||| | ||||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||    
T  50905881 aaaattttagggtgaaaggatggtgccccagttcaaggcatggaagaccttcggactcaaagagcacctacaaagataattacatttacctctctccaaa 50905782  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    ||||||||||| |||||||| ||| ||||    
T  50905781 ggcactagcggggctcgaacccagattct 50905753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 30970383 - 30970490
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||  || ||||||||||||| || ||||    
T  30970383 aaaattttagggtgaggggatggtgccccagtctaaggtagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaa 30970482  T
Q  257 ggcactag 264  Q
    ||||||||    
T  30970483 ggcactag 30970490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 7173584 - 7173694
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||  || | |||||||||||  ||||||    
T  7173584 aaaattttagggtgaggggatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaa 7173683  T
Q  257 ggcactagcgg 267  Q
    |||||||||||    
T  7173684 ggcactagcgg 7173694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 39863777 - 39863887
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||| ||| | ||||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||| || |||||||    
T  39863777 aaaattttagggtgaggggatagtgtctcagtccaaggtagagaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaa 39863876  T
Q  257 ggcactagcgg 267  Q
    |||||||||||    
T  39863877 ggcactagcgg 39863887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 29576548 - 29576444
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  29576548 aaaattttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccctccaaa 29576449  T
Q  257 ggcac 261  Q
    |||||    
T  29576448 ggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 32139297 - 32139169
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    |||| |||||| ||| ||||||||| |||||||||||| || |||||||||| |||||||||| ||||||||||  |||||||||||||||| |||||||    
T  32139297 aaaaatttagggtgaagggatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaa 32139198  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    | ||||||||| | |||||| ||||||||    
T  32139197 gacactagcggggttcgaacccaggttct 32139169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 51713964 - 51714092
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||  || ||| ||||||||| || ||||    
T  51713964 aaaattttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctcccttcaaa 51714063  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    |||||||| || |||||||| | ||||||    
T  51714064 ggcactagtggggctcgaacccgggttct 51714092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 55231820 - 55231715
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||||||||  || ||||||||||||| || ||||    
T  55231820 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcccttcaaa 55231721  T
Q  257 ggcact 262  Q
    ||||||    
T  55231720 ggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 2570334 - 2570216
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||| |||||| |||||||| || ||| ||  ||| ||| ||||||||| |||||||    
T  2570334 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagatcttcggactcaaagaacatttataatgatatttatatttacctccctccaaa 2570235  T
Q  257 ggcactagcggagctcgaa 275  Q
    ||||| |||||||||||||    
T  2570234 ggcaccagcggagctcgaa 2570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 22304090 - 22304163
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaa 230  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22304090 aaaattttagggtgagaggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaa 22304163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 8740550 - 8740462
Alignment:
Q  188 tccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaac 276  Q
    ||||||| | |||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||||||||| ||||||||    
T  8740550 tccaaggcatggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaac 8740462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 41523526 - 41523423
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||| ||||||||| |||| |||||| ||||||||||||||| |||||||||||||||| |||  || ||||||||||||| |||||||| ||    
T  41523526 ttttaggatgaagggatggtgtcccaatccaagatagggaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccctccaaagaca 41523427  T
Q  261 ctag 264  Q
    ||||    
T  41523426 ctag 41523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 676861 - 676770
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc 248  Q
    ||||||||| | | |||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||  || ||||| |||||||    
T  676861 aaaattttaaggtaaggggatggtgttacagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctc 676770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 51279035 - 51279123
Alignment:
Q  160 attttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc 248  Q
    |||||||| ||||||||||||| |  | |||||||| ||||||||||| ||||||||||||||||||||||  || ||||||| |||||    
T  51279035 attttagggtgaggggatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctc 51279123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 47626992 - 47627099
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||| |||||||  ||||||||||| |||||||||||||| | |||||||| | ||| | |  || ||||||||||||| || ||||    
T  47626992 aaaattttagggtgaggagatggtgttccagtccaaggcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctcccttcaaa 47627091  T
Q  257 ggcactag 264  Q
    ||||||||    
T  47627092 ggcactag 47627099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 2294719 - 2294828
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||||||||||||| ||||||| |||| || |||||| ||||||||||| || ||||      | |||||||||||||||  |||||||||||    
T  2294719 ttttagggtgaggggatggtgccccagtctaaggcagtgaagactttcgggctcaacgaacact------tgtaattacatttaccttcctccaaaggca 2294812  T
Q  261 ctagcggagctcgaac 276  Q
    |||||| | |||||||    
T  2294813 ctagcgaaactcgaac 2294828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 257
Target Start/End: Original strand, 4080551 - 4080651
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||| |  ||||||||||||  ||| ||||||  || |||||| ||| | ||||||||||| |||||||| |||||||||||||||| |||||||    
T  4080551 aaaattttaaggcgaggggatggtgctccaatccaagacagagaagacattcagactcaaagagcatttacaaatgtaattacatttacctccctccaaa 4080650  T
Q  257 g 257  Q
    |    
T  4080651 g 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 37990599 - 37990663
Alignment:
Q  162 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcactta 226  Q
    |||||| |||||| |||||| ||||||||||||||||||||| |||| ||||||||||| |||||    
T  37990599 tttaggatgagggaatggtgccccagtccaaggtagggaagatcttcaggctcaaagagtactta 37990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 23084468 - 23084530
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcac 223  Q
    ||||||| ||||| ||||||  |||||| ||||||||||||||||||||| ||||||||||||    
T  23084468 ttttagggtgaggagatggtaccccagttcaaggtagggaagaccttcggactcaaagagcac 23084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 50399672 - 50399760
Alignment:
Q  188 tccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaac 276  Q
    |||||||||| |||||| ||  |||||||||| ||||||||||  || ||||||||||||  ||||||  |||||||||| ||||||||    
T  50399672 tccaaggtagagaagacatttaggctcaaagaacacttacaaaggtatttacatttaccttcctccaagagcactagcggggctcgaac 50399760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 22423479 - 22423403
Alignment:
Q  187 gtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 263  Q
    |||||| | ||||||||||||||  | |||||| ||||||||||  || ||||||||||||| ||||||||| ||||    
T  22423479 gtccaaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtacta 22423403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 107691 - 107818
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    |||||||||||| |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  107691 aaaattttaggt-gaggggatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 107789  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    ||||||||||| |||||||| | ||||||    
T  107790 ggcactagcggggctcgaactcgggttct 107818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 11404134 - 11404006
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  11404134 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 11404035  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    | ||||||||  |||||||| ||||||||    
T  11404034 gacactagcgaggctcgaacccaggttct 11404006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 19723444 - 19723316
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||  |||||||||||||||| |||||||    
T  19723444 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 19723345  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    ||||||||||| |||||||| | ||||||    
T  19723344 ggcactagcggggctcgaacccgggttct 19723316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 17095679 - 17095568
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||||||    
T  17095679 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 17095580  T
Q  261 ctagcggagctc 272  Q
    ||||||| ||||    
T  17095579 ctagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 32296638 - 32296746
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| || ||||    
T  32296638 aaaattttagggtgaggggatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaa 32296737  T
Q  257 ggcactagc 265  Q
    |||||||||    
T  32296738 ggcactagc 32296746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 158 - 285
Target Start/End: Complemental strand, 4840272 - 4840145
Alignment:
Q  158 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 257  Q
    |||||||||| ||||||||||||| || ||||||||| |||||||||||| || ||||||||||||||||||   |||| ||||||||||| ||||||||    
T  4840272 aaattttagggtgaggggatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccctccaaag 4840173  T
Q  258 gcactagcggagctcgaacacaggttct 285  Q
    |||||||||| |||||||| | ||||||    
T  4840172 gcactagcggggctcgaacccgggttct 4840145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 22711642 - 22711539
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  22711642 aaaattttaggatgaggggatggtgccccagtccaaggcaaggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 22711543  T
Q  257 ggca 260  Q
    ||||    
T  22711542 ggca 22711539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 29767319 - 29767204
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||  |||||  ||||||||| || ||||    
T  29767319 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatt--atttacctcccttcaaa 29767222  T
Q  257 ggcactagcggagctcga 274  Q
    ||||||||||| ||||||    
T  29767221 ggcactagcggggctcga 29767204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 28739564 - 28739688
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||| |  |||||||||||    
T  28739564 ttttagggtgaggggatggtgctgcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcctccaaaggca 28739663  T
Q  261 ctagcggagctcgaacacaggttct 285  Q
    |||| || ||| |||| ||||||||    
T  28739664 ctagtggggcttgaacccaggttct 28739688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 36261779 - 36261679
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||| | ||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  36261779 aaaattttaaggtgaggggatggtgccccagttcaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36261680  T
Q  257 g 257  Q
    |    
T  36261679 g 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 11610413 - 11610295
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| ||||||||||| || | |||||||||||||| ||| |||||||||||| ||| ||| ||||||||  |||||||    
T  11610413 aaaattttagggtgaggggatggtgccccagtccaagataagtaagaccttcgggcttaaacagcacttacaaagatatttatatttacctttctccaaa 11610314  T
Q  257 ggcactagcggagctcgaa 275  Q
    ||||||||||  |||||||    
T  11610313 ggcactagcgaggctcgaa 11610295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 157 - 278
Target Start/End: Complemental strand, 30682971 - 30682851
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||| | ||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||  || ||||||||| ||| |||||||    
T  30682971 aaaattttaaggtgaggggatggtg-cccagtccaaggcagggaagatcttcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaa 30682873  T
Q  257 ggcactagcggagctcgaacac 278  Q
    ||||| || || ||||||||||    
T  30682872 ggcaccagtggggctcgaacac 30682851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 21355004 - 21355087
Alignment:
Q  178 ggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 261  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  21355004 ggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 24475029 - 24475113
Alignment:
Q  191 aaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 275  Q
    |||| ||| |||||||||||||||||||| ||||||||||  || ||||||||||||| ||||||||||||||||||||||||||    
T  24475029 aaggcaggaaagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaa 24475113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 43288205 - 43288105
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    |||| |||||| |||||||||||||  ||||||||||| ||||||||||||||| |||||| | || |||||||  |||||||||||||||| |||||||    
T  43288205 aaaaatttagggtgaggggatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaaa 43288106  T
Q  257 g 257  Q
    |    
T  43288105 g 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 11909426 - 11909509
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattta 244  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||  || |||||||||    
T  11909426 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattta 11909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 41553418 - 41553330
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttac 245  Q
    ||||||||||| |||||||||||||  |||||| |||| |||||||||||||| ||||||||| ||||||||||  || ||||||||||    
T  41553418 aaaattttagggtgaggggatggtgctccagtctaaggcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttac 41553330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 27879559 - 27879620
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 218  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  27879559 aaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 27879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 28019740 - 28019801
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 218  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  28019740 aaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 28019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 27881044 - 27881115
Alignment:
Q  214 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacacaggttct 285  Q
    |||||||||||||||||  || ||||||||||||| || ||||||||||||||| |||||||| | ||||||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttct 27881115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 28021225 - 28021296
Alignment:
Q  214 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacacaggttct 285  Q
    |||||||||||||||||  || ||||||||||||| || ||||||||||||||| |||||||| | ||||||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttct 28021296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 30054445 - 30054569
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||||||    
T  30054445 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 30054544  T
Q  261 ctagcggagctcgaacacaggttct 285  Q
    ||||||| |||||||| | ||||||    
T  30054545 ctagcggggctcgaacccgggttct 30054569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 30370061 - 30370178
Alignment:
Q  159 aattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaagg 258  Q
    ||||||| | ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||     
T  30370061 aattttaaggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaga 30370160  T
Q  259 cactagcggagctcgaac 276  Q
    |||||| || ||||||||    
T  30370161 cactagtggggctcgaac 30370178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 20014591 - 20014463
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| | |||||||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||||||| |||||||    
T  20014591 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccctccaaa 20014492  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    || ||||||||  ||||||| | ||||||    
T  20014491 ggtactagcgggactcgaacccgggttct 20014463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 45324139 - 45324011
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||  || ||||||||||||| |||||||    
T  45324139 aaaattttagggtgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctccctccaaa 45324040  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
     |||||||||| ||| |||| ||||||||    
T  45324039 agcactagcggggctggaacccaggttct 45324011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 21090236 - 21090129
Alignment:
Q  169 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcgga 268  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||| |||||||||||     
T  21090236 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggcactagcggg 21090137  T
Q  269 gctcgaac 276  Q
    ||||||||    
T  21090136 gctcgaac 21090129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 22024235 - 22024128
Alignment:
Q  158 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 257  Q
    |||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||    
T  22024235 aaattttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccatccaaag 22024136  T
Q  258 gcactagc 265  Q
    ||||||||    
T  22024135 gcactagc 22024128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 12025314 - 12025186
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||||||| || |||||||||  |||||||||||||||  |||||||    
T  12025314 aaaattttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttcctccaaa 12025215  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    |||||||  || |||||||| ||||||||    
T  12025214 ggcactaatggggctcgaacccaggttct 12025186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 14498078 - 14498182
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||| | |||||||||||| |||||||||||| || |||||||||||||||||||  |||||||||||||||| |||||||    
T  14498078 aaaattttagggtgaggggatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccctccaaa 14498177  T
Q  257 ggcac 261  Q
    |||||    
T  14498178 ggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 30850841 - 30850958
Alignment:
Q  159 aattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaagg 258  Q
    ||||||||| ||||||||||||| |||||||||||  ||| |||||||||||| ||||||||||||||||||   ||||| ||||||||| ||||||||     
T  30850841 aattttagggtgaggggatggtgccccagtccaagacaggaaagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaaga 30850940  T
Q  259 cactagcggagctcgaac 276  Q
    ||||| ||| ||||||||    
T  30850941 cactaacggggctcgaac 30850958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 33763254 - 33763372
Alignment:
Q  158 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 257  Q
    |||||||||| |||||||||| || |||||| ||||| |||||| || |||||||||||| | ||||||||||  ||||||||||| |||| ||| ||||    
T  33763254 aaattttagggtgaggggatgatgccccagttcaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaag 33763353  T
Q  258 gcactagcggagctcgaac 276  Q
    |||||||||| ||||||||    
T  33763354 gcactagcggggctcgaac 33763372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 35371756 - 35371833
Alignment:
Q  169 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacc 246  Q
    ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  35371756 tgaggggatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 4573512 - 4573384
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||| ||| | ||||||||   |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  4573512 aaaattttagggtgaggggatagtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 4573413  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    | || ||| || |||||||| | ||||||    
T  4573412 gacattagtggggctcgaacccgggttct 4573384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 33762539 - 33762646
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| |||||||||| || |||||||||||| |||||| || |||||||||||| | ||||||||||  ||||||||||| |||| ||| |||    
T  33762539 aaaattttagggtgaggggatgatgccccagtccaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaa 33762638  T
Q  257 ggcactag 264  Q
    ||||||||    
T  33762639 ggcactag 33762646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 44438562 - 44438668
Alignment:
Q  170 gaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggag 269  Q
    |||||||||||  |||||| ||||| ||||||||||||||   | ||||| ||||||||||  |||||||||||||||| ||||||||||| ||||||||    
T  44438562 gaggggatggtaccccagttcaaggcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggcattagcggag 44438661  T
Q  270 ctcgaac 276  Q
    |||||||    
T  44438662 ctcgaac 44438668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 35618104 - 35618035
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaa 230  Q
    ||||||| ||||||||||||  |||||||||| | | |||||||||||||||||||||||||||||||||    
T  35618104 ttttagggtgaggggatggtaccccagtccaaagcaaggaagaccttcgggctcaaagagcacttacaaa 35618035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 17015252 - 17015192
Alignment:
Q  158 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 218  Q
    |||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||||    
T  17015252 aaattttaggatgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaag 17015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 20685458 - 20685348
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  20685458 aaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 20685359  T
Q  257 ggcactagcgg 267  Q
    |||||||||||    
T  20685358 ggcactagcgg 20685348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 35163749 - 35163877
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  35163749 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 35163848  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    |||| ||| || |||||||| | ||||||    
T  35163849 ggcattagtggggctcgaaccctggttct 35163877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 158 - 285
Target Start/End: Original strand, 19686827 - 19686954
Alignment:
Q  158 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 257  Q
    |||||||||| |||||||||| || ||||||| |||| ||| |||| ||||||||||||||||||||||||||  |||||||||||||||| || |||||    
T  19686827 aaattttagggtgaggggatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctacaaag 19686926  T
Q  258 gcactagcggagctcgaacacaggttct 285  Q
    ||||||| || |||||||| ||||||||    
T  19686927 gcactagaggggctcgaacccaggttct 19686954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 17948813 - 17948703
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  17948813 aaaattttaaggtgaggggatggtgtcccagtccaagacagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaaa 17948714  T
Q  257 ggcactagcgg 267  Q
    | |||||||||    
T  17948713 gacactagcgg 17948703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 15070246 - 15070152
Alignment:
Q  169 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 263  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||| || ||||||||||| |||||| ||||||||| ||||||||||||||    
T  15070246 tgaggggatggtgccccagtctaaggcagggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggcacta 15070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 2711739 - 2711861
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| |||||||||||||      ||||||| |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  2711739 aaaattttagggtgaggggatggtg------tccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 2711832  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
     ||||||| || |||||||  ||||||||    
T  2711833 agcactagtggggctcgaatccaggttct 2711861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 14505524 - 14505640
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    |||||||||||| |||||||||||| |||||||||||| | |||||| ||||| || ||||||  | |||||||  || ||||||||||||| |||||||    
T  14505524 aaaattttaggt-gaggggatggtgccccagtccaaggcacggaagatcttcgcgcccaaagaatatttacaaaggta-ttacatttacctccctccaaa 14505621  T
Q  257 ggcactagcggagctcgaa 275  Q
     |||||||||| |||||||    
T  14505622 agcactagcggggctcgaa 14505640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 24336718 - 24336633
Alignment:
Q  187 gtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctc 272  Q
    |||||||| |||||||| |||| |||||||| | ||||||||||  || ||||||||||||| ||||||||| |||||| ||||||    
T  24336718 gtccaaggcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactagcagagctc 24336633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 14496406 - 14496357
Alignment:
Q  236 ttacatttacctcactccaaaggcactagcggagctcgaacacaggttct 285  Q
    ||||||||||||| ||||||||||||||| || |||||||| | ||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttct 14496357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 17064456 - 17064328
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||  || ||||||||||||| |||||||    
T  17064456 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctccctccaaa 17064357  T
Q  257 ggcactagcggagctcgaacacaggttct 285  Q
    ||||||||||  |||||||| | ||||||    
T  17064356 ggcactagcgaggctcgaacccgggttct 17064328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 20983006 - 20983121
Alignment:
Q  161 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 260  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||    
T  20983006 ttttagggtgaggggatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccgaaggca 20983105  T
Q  261 ctagcggagctcgaac 276  Q
    ||||||| ||||||||    
T  20983106 ctagcggggctcgaac 20983121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 31640568 - 31640493
Alignment:
Q  17 caagaacaaacatggtcatttcttcaggtgctcacaaacgcagctggtcatgactttcttctggactcctgactaa 92  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  31640568 caagaacaaacatggtcatttcttcaggtgctcgcaaacgcagctggtcatgactttcttctggactcttgactaa 31640493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 37976683 - 37976551
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattac----atttacctcactc 252  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||| || ||||||||||||||| ||||||||||||  || ||||    ||||||||| ||     
T  37976683 aaaattttagggtgaggggatggtgccccagttcaaggcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacattaatttacctccctt 37976584  T
Q  253 caaaggcactagcggagctcgaacacaggttct 285  Q
    |||| |||||||||| |||||||| ||||||||    
T  37976583 caaatgcactagcggggctcgaacccaggttct 37976551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 41910957 - 41910858
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||| | ||||||||||||| |||||| ||||| || |||||| |||||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  41910957 aaaattttaaggtgaggggatggtgccccagttcaaggcagagaagacattcgggctcaaagaacacttacaaagttaattacatttacctc-ctccaaa 41910859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 31640380 - 31640331
Alignment:
Q  93 gaaaagagttagcgaccaagaaattggccaagctattttcttcaaaggta 142  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  31640380 gaaaagagttagtgaccaagaaattggcgaagctattttcttcaaaggta 31640331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 5009416 - 5009531
Alignment:
Q  157 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 256  Q
    ||||||||||| || ||||||| ||  ||||| ||||| | |||||||||||||  ||||||| || ||||||| ||| ||||||||| ||| |||||||    
T  5009416 aaaattttagggtg-ggggatgatgcaccagttcaaggcatggaagaccttcggattcaaagaacatttacaaaaatatttacatttatctctctccaaa 5009514  T
Q  257 ggcactagcggagctcg 273  Q
    | ||||| ||| |||||    
T  5009515 gacactaacggggctcg 5009531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 31673956 - 31673894
Alignment:
Q  163 ttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcactt 225  Q
    ||||| ||||||| ||||| |||||||||||| ||||| |||||| |||||||||| ||||||    
T  31673956 ttagggtgaggggttggtgccccagtccaaggcagggaggaccttagggctcaaagggcactt 31673894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 6993 - 7087
Alignment:
Q  182 gcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaac 276  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| ||||  ||||||||||||| || ||||||| ||||||||||  |||||||    
T  6993 gcccagtccaaggtagggaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaac 7087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University