View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12466_low_6 (Length: 271)
Name: NF12466_low_6
Description: NF12466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12466_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 489154 - 488903
Alignment:
| Q |
1 |
agagacagtccttagttgggagagcataggtttcacatctaaggatggtaccatcaggcaaagctagtttcttgagaaggtcaaaattgtgatttccaac |
100 |
Q |
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| T |
489154 |
agagacagtccttagttgggagagcataggtttcacatctaaggatggtaccatcaggcaaagctagtttcttgagaaggtcaaaattgtgatttccaac |
489055 |
T |
|
| Q |
101 |
ggtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatcccaatctggttgg |
200 |
Q |
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| T |
489054 |
agtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatcccaatctggttgg |
488955 |
T |
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| Q |
201 |
atgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatc |
252 |
Q |
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| T |
488954 |
atgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatc |
488903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 34697039 - 34697175
Alignment:
| Q |
114 |
taaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatcccaatctggttggatgaaatttccca |
213 |
Q |
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| T |
34697039 |
taaattggtccaccagagacagctctagaggcagcatgaaattcagcacaagggtgagtggattgaaacatgtcccaatctgggtgaatgaaatttccca |
34697138 |
T |
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| Q |
214 |
tccataagctattgtatgcacaatgcaccatgtgaca |
250 |
Q |
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| T |
34697139 |
tccataaactgttataggcacaatgtaccatgtgaca |
34697175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 43637766 - 43637931
Alignment:
| Q |
87 |
ttgtgatttccaacggtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatat |
186 |
Q |
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| T |
43637766 |
ttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgagattggaacatgt |
43637865 |
T |
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| Q |
187 |
cccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatc |
252 |
Q |
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| T |
43637866 |
cccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatc |
43637931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 43976035 - 43975962
Alignment:
| Q |
174 |
gattgaaacatatcccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtg |
247 |
Q |
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||||||||||| |||||||| ||||| || | | ||||||||||||||||||||| | |||||| | |||||| |
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| T |
43976035 |
gattgaaacatgtcccaatcaggttgaatcatttgtcccatccataagctattgtaggaacaatgaatcatgtg |
43975962 |
T |
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