View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12466_low_7 (Length: 256)
Name: NF12466_low_7
Description: NF12466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12466_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 28559895 - 28559660
Alignment:
| Q |
1 |
atgtgtttctcaagatctgttctctaacacaattaagtgaaacttcagtgaccttgctttgatgccaactgaaggtgagaaaaacacaataagatgattg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28559895 |
atgtgtttctcaagatcagttctctaacacaattaagtgaaacttcagtgaccttgctttgatgccaattgaaggtgagaaaaacacaataagatgattg |
28559796 |
T |
|
| Q |
101 |
aattgtgtttgacgctttttgcaactctttcaaaacaaagataatagtagaaagtaaagagataaatgaaagagacaatacaaaatgtgtatcatggttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28559795 |
aattgtgtttgacgctttttgcaactctttcaaaacaaagatgatagtagaaagtaaagagataaatgaaagagacaatacaaaatgtgtatcatggttc |
28559696 |
T |
|
| Q |
201 |
accccacaacccaagattacttacaacaacaacact |
236 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
28559695 |
accccacaatccaagattacttacaacaacaacact |
28559660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 30133764 - 30133720
Alignment:
| Q |
40 |
aaacttcagtgaccttgctttgatgccaactgaaggtgagaaaaa |
84 |
Q |
| |
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||||||||| ||||||||| ||||||||| ||||||||||||||| |
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|
| T |
30133764 |
aaacttcagagaccttgctctgatgccaattgaaggtgagaaaaa |
30133720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 30135160 - 30135116
Alignment:
| Q |
40 |
aaacttcagtgaccttgctttgatgccaactgaaggtgagaaaaa |
84 |
Q |
| |
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||||||||| ||||||||| ||||||||| ||||||||||||||| |
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|
| T |
30135160 |
aaacttcagagaccttgctctgatgccaattgaaggtgagaaaaa |
30135116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 30144711 - 30144667
Alignment:
| Q |
40 |
aaacttcagtgaccttgctttgatgccaactgaaggtgagaaaaa |
84 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||||||||||||||| |
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|
| T |
30144711 |
aaacttcagagaccttgctctgatgccaattgaaggtgagaaaaa |
30144667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 10878759 - 10878715
Alignment:
| Q |
50 |
gaccttgctttgatgccaactgaaggtgagaaaaacacaataaga |
94 |
Q |
| |
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|||| |||| |||| |||||||||||||||||||| ||||||||| |
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|
| T |
10878759 |
gaccgtgctctgataccaactgaaggtgagaaaaatacaataaga |
10878715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 17187321 - 17187439
Alignment:
| Q |
101 |
aattgtgtttgacgctttttgcaactctttcaaaacaaagataatagtagaaagtaaagagataaatgaaagagacaatacaaaatgtgtatcatggttc |
200 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||| ||||||||| | ||||||||| ||||||| ||||||||||||||||| || |||| ||| | |
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| T |
17187321 |
aattgtgtttgaagctttttgaaa-tctttcaaagcaaagataacaacagaaagtaaggagataatggaaagagacaatacaaagagtttatcttgg--c |
17187417 |
T |
|
| Q |
201 |
accccacaacccaagattactt |
222 |
Q |
| |
|
|||||||||||| | ||||||| |
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|
| T |
17187418 |
accccacaacccgaaattactt |
17187439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 26656933 - 26656893
Alignment:
| Q |
98 |
ttgaattgtgtttgacgctttttgcaactctttcaaaacaa |
138 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
26656933 |
ttgaattgtgtttgacgcttttttcaactttttcaaaacaa |
26656893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 21549224 - 21549185
Alignment:
| Q |
70 |
tgaaggtgagaaaaacacaataagatgattgaattgtgtt |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
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|
| T |
21549224 |
tgaaggtgagaaaaacacaataaggggattgaattgtgtt |
21549185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 9064783 - 9064817
Alignment:
| Q |
55 |
tgctttgatgccaactgaaggtgagaaaaacacaa |
89 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |
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| T |
9064783 |
tgctttgatgccaactgaaggtaagaaaaacacaa |
9064817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 14903336 - 14903303
Alignment:
| Q |
56 |
gctttgatgccaactgaaggtgagaaaaacacaa |
89 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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| T |
14903336 |
gctttgatgccaactgaaggtgagaaaaatacaa |
14903303 |
T |
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