View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12467_high_4 (Length: 331)
Name: NF12467_high_4
Description: NF12467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12467_high_4 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 323037 - 322714
Alignment:
| Q |
1 |
gttcaagtgcccgcaaaggacaccgacatgacaccacacatgtgaccgttcaactaattcannnnnnnnnnnnnnnaccggtgtccacatgtgtcagtat |
100 |
Q |
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| T |
323037 |
gttcaagtgcccgcaaaggacaccaacatgacaccacacatgtgaccgttcaactaattcattttttcagttttttaccggtgtccacatgtgtcagtat |
322938 |
T |
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| Q |
101 |
agtgtctggtgtctgtgtgtgtatcaatgcttcatatgcaaacaatgtagcaccaacatttccgatgaaaggtgtgtccagtgtccaacaacaaacattg |
200 |
Q |
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| T |
322937 |
agtgtctggtgtctgtgtgtgtatcaatgcttcatatgcaaacaatgtagcaccaacacttccgatgaaaggtgtgtccagtgtccaacaacaaacattg |
322838 |
T |
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| Q |
201 |
gacaccgacacaccacacatgtgactgttcaatcaattcattttttaaaattttgactagtgccaatattgtgtttggtgttgtgtcagtgcttcatata |
300 |
Q |
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| T |
322837 |
gacaccgacacaccacacatgtgactgttcaatcaattcattttttaaaaatttgactagtgccaatattgtgtttggtgt-------ctgcttcatata |
322745 |
T |
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| Q |
301 |
caaactacgtagcaccaatacttctgatgga |
331 |
Q |
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| T |
322744 |
caaactacgtagcaccaacacttctgatgga |
322714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 10725003 - 10724962
Alignment:
| Q |
145 |
atgtagcaccaacatttccgatgaaaggtgtgtccagtgtcc |
186 |
Q |
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| T |
10725003 |
atgtagcaccaacatttcagatcaaaggtgtgttcagtgtcc |
10724962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 28486755 - 28486799
Alignment:
| Q |
146 |
tgtagcaccaacatttccgatgaaaggtgtgtccagtgtccaaca |
190 |
Q |
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| T |
28486755 |
tgtagcaccaacacttctgatcgaaggtgtgtccagtgtccaaca |
28486799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 29799168 - 29799212
Alignment:
| Q |
146 |
tgtagcaccaacatttccgatgaaaggtgtgtccagtgtccaaca |
190 |
Q |
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| T |
29799168 |
tgtagcaccaacacttctgatcgaaggtgtgtccagtgtccaaca |
29799212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 34399843 - 34399889
Alignment:
| Q |
144 |
aatgtagcaccaacatttccgatgaaaggtgtgtccagtgtccaaca |
190 |
Q |
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| T |
34399843 |
aatgtagcaccaacatttcagattgaaggtgtgtccagtgttcaaca |
34399889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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