View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12467_low_1 (Length: 389)
Name: NF12467_low_1
Description: NF12467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12467_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 25740385 - 25740755
Alignment:
| Q |
1 |
gaacatcaccatgctttgatgtctcctcagggaagtatttgatgctgctatcattcaaacaaaacatcccaaactctaaacttgtcggtggatttatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25740385 |
gaacatcaccatgctttgatgtctcctcagggaagtatttgatgctgctatcattcaaacaaaacatcccaaactctaaacttgtcggtggatttatttt |
25740484 |
T |
|
| Q |
101 |
tggacatggaaaagtaatggcaaagtagatactgttccctctaactaactcttcgctgtaattaagttcatcccttgccaataccatgcttttccaatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25740485 |
tggacatggaaaagtaatggcaaagtagatactgttccctctaactaactcttcactgtaattaagttcatcccttgccaataccatgcttttccaatta |
25740584 |
T |
|
| Q |
201 |
ctaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcatgtccagcttgaacacttcaaagctggtaagcttaggtg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25740585 |
ctaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttatttgtgtccagcttgaacacttcaaagctggtaagcttaggtg |
25740684 |
T |
|
| Q |
301 |
gcttaacaaatgatgagacaacattgaaacggtcagatatatgttgttcagcatcaatctcaccattatag |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25740685 |
gcttaacaaatgatgagacaacattgaaacggtcagatatatgttgttcagtatcaatctcaccattatag |
25740755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 25732684 - 25733054
Alignment:
| Q |
1 |
gaacatcaccatgctttgatgtctcctcagggaagtatttgatgctgctatcattcaaacaaaacatcccaaactctaaacttgtcggtggatttatttt |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25732684 |
gaacctcaccatgctttgacgtctcctcagggaagtatttgatgcttctatcattcagacaaaatatcccaaactctaaacttgtcggtggatttatttt |
25732783 |
T |
|
| Q |
101 |
tggacatggaaaagtaatggcaaagtagatactgttccctctaactaactcttcgctgtaattaagttcatcccttgccaataccatgcttttccaatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| || ||| |
|
|
| T |
25732784 |
aggacatggaaaagtaatggcaaagtagatactattccctctaactaactcttcactgtaattaagttcatcccttgacattaccatgcttttgcagtta |
25732883 |
T |
|
| Q |
201 |
ctaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcatgtccagcttgaacacttcaaagctggtaagcttaggtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25732884 |
ctaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcgtgtccagcttgaacacttcaaagctggtaagcttaggtg |
25732983 |
T |
|
| Q |
301 |
gcttaacaaatgatgagacaacattgaaacggtcagatatatgttgttcagcatcaatctcaccattatag |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
25732984 |
gcttaacaaatgatgagacaacattgaaacggtcagagatatgttgttcagtatcaatctcaccattatag |
25733054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 25763073 - 25763443
Alignment:
| Q |
1 |
gaacatcaccatgctttgatgtctcctcagggaagtatttgatgctgctatcattcaaacaaaacatcccaaactctaaacttgtcggtggatttatttt |
100 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||| |||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| | | |
|
|
| T |
25763073 |
gaacatcaccatgctgtaatgtctccttagggaggtatatgatgcagctaccattcaaacaaaacatcccaaactctaaacttaacggtggatttaatct |
25763172 |
T |
|
| Q |
101 |
tggacatggaaaagtaatggcaaagtagatactgttccctctaactaactcttcgctgtaattaagttcatcccttgccaataccatgcttttccaatta |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||| |||||||| |||| || ||||||||| ||||||||| |
|
|
| T |
25763173 |
tggacatggaaaagtaatggcaaaatagacactattccctctaactaactcttcactgtaattcagttcatctcttgtcattaccatgctgttccaatta |
25763272 |
T |
|
| Q |
201 |
ctaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcatgtccagcttgaacacttcaaagctggtaagcttaggtg |
300 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
25763273 |
ctaagaaaagccactctatcttcgagcttcacattctgccacccaataggactcttgtttgcgtccagcttgaacacttcaaagctggtaacctgaggtg |
25763372 |
T |
|
| Q |
301 |
gcttaacaaatgatgagacaacattgaaacggtcagatatatgttgttcagcatcaatctcaccattatag |
371 |
Q |
| |
|
|||| ||||| ||||| || |||||||||||||| | |||||||| || |||||||||||||||||| |
|
|
| T |
25763373 |
gctttgaaaatgctgagatgactttgaaacggtcagagacatgttgttgagtttcaatctcaccattatag |
25763443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 25755126 - 25755459
Alignment:
| Q |
1 |
gaacatcaccatgctttgatgtctcctcagggaagtatttgatgctgctatcattcaaacaaaacatcccaaactctaaacttgtcggtggatttatttt |
100 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |
|
|
| T |
25755126 |
gaacatcaccatgctttaatgtcttctcaggaaagtatttgatgctgctatcattcaaacaaaacatcccaaactctaaacttgtcgatggattatatct |
25755225 |
T |
|
| Q |
101 |
tggacatggaaaagtaatggcaaagtagatactgttccctctaactaactcttcgctgtaattaagttcatcccttgccaataccatgcttttccaatta |
200 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||| | ||||||||| || || | |
|
|
| T |
25755226 |
tggacatcgaaaagtaacggcaaagtagatactattccctctgactaactcttcaatgttattaagttcatcccttgatattaccatgctcttacagcaa |
25755325 |
T |
|
| Q |
201 |
ctaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcatgtccagcttgaacacttcaaagctggtaagcttaggtg |
300 |
Q |
| |
|
|||| |||| |||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
25755326 |
ctaagaaaaaccactttatcatccagcctcacattctgccacccaatcggactcttattcgtgtccagcttgaacacttcaaagcaggtaacatgaggtg |
25755425 |
T |
|
| Q |
301 |
gcttaacaaatgatgagacaacattgaaacggtc |
334 |
Q |
| |
|
||||| || ||| | ||| || | |||||||||| |
|
|
| T |
25755426 |
gcttagcatatgctaagataatactgaaacggtc |
25755459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 25746564 - 25746854
Alignment:
| Q |
1 |
gaacatcaccatgctttgatgtctcctcagggaagtatttgatgctgctatcattcaaacaaaacatcccaaactctaaacttgtcggtggatttatttt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||| || ||||||| | | |
|
|
| T |
25746564 |
gaacataaccatgctttgatgtctccatagggccgtatttgaccctgctatcattcaaacaaaacatcccaacctcaaaacttctcagtggattaaataa |
25746663 |
T |
|
| Q |
101 |
tggacatggaaaagtaatggcaaagtagatactgttccctctaactaactcttcgctgtaattaagttcatcccttgccaataccatgcttttccaatta |
200 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| |||||||| ||||||||||| |||| |||||| |||||||||| || |||||||||||| || ||| |
|
|
| T |
25746664 |
tggacatggaaaagtaacggcgaagtagatactattccctcttactaactcttcactgtgattaagatcatcccttgacattaccatgcttttgcattta |
25746763 |
T |
|
| Q |
201 |
ctaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcatgtccagcttgaacacttcaaagctggtaa |
291 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
25746764 |
ctaacaaaagccactttatcttccagcgtcacattcttccacccaataggactcttgttcgtgtccagcttgaaaacttcaacgctggtaa |
25746854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 3 - 315
Target Start/End: Complemental strand, 30149853 - 30149541
Alignment:
| Q |
3 |
acatcaccatgctttgatgtctcctcagggaagtatttgatgctgctatcattcaaacaaaacatcccaaactctaaacttgtcggtggatttatttttg |
102 |
Q |
| |
|
||||| || ||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||| | |||||||| || | ||||||||| | |
|
|
| T |
30149853 |
acatcgccctgcttcgatgtctccacaggaaagtatttgatgctgctatcagtcaaacaaaacatccccacctctaaacctgaccatggatttatg---g |
30149757 |
T |
|
| Q |
103 |
gacatggaaaagtaatggcaaagtagatactgttccctctaa--ct-aactcttcgctgtaattaagttcatcccttgccaataccatgcttttccaatt |
199 |
Q |
| |
|
||||||||||||||| ||||| || || | ||||||| || || ||||||| || |||||||| ||||||| | || ||||| || || | | |
|
|
| T |
30149756 |
gacatggaaaagtaacagcaaaataaatgttattccctccaatcctcaactctttattgcaattaagtacatccctggacataaccatactcttgtagct |
30149657 |
T |
|
| Q |
200 |
actaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcatgtccagcttgaacacttcaaagctggtaagcttaggt |
299 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||| ||||||| | ||| | | ||||||||||||| ||||||||| || ||| || ||| |
|
|
| T |
30149656 |
actaacaaaagacactctatcttccagcttcacattctgccatccaatagaatccttgtccgtgtccagcttgaagacttcaaagatgttaatctgaggc |
30149557 |
T |
|
| Q |
300 |
ggcttaacaaatgatg |
315 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30149556 |
ggcttaacaaatgatg |
30149541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 3 - 315
Target Start/End: Complemental strand, 30156185 - 30155873
Alignment:
| Q |
3 |
acatcaccatgctttgatgtctcctcagggaagtatttgatgctgctatcattcaaacaaaacatcccaaactctaaacttgtcggtggatttatttttg |
102 |
Q |
| |
|
||||| |||||||| ||||||||| |||| |||||||||| |||||||||| ||||||||||||| || |||||||||| || | ||||||||| | |
|
|
| T |
30156185 |
acatcgccatgcttcgatgtctccacaggaaagtatttgacgctgctatcagtcaaacaaaacattcccaactctaaacctgaccatggatttata---g |
30156089 |
T |
|
| Q |
103 |
gacatggaaaagtaatggcaaagtagatactgttccctctaa--ct-aactcttcgctgtaattaagttcatcccttgccaataccatgcttttccaatt |
199 |
Q |
| |
|
||||||||||||||| ||||| || || || ||||||| || || ||||||| || |||||||| ||||||||| || ||||| || || | |
|
|
| T |
30156088 |
gacatggaaaagtaacagcaaaataaatgctattccctccaatcctcaactctttattgcaattaagtacatcccttgacataaccatactcttgtagca |
30155989 |
T |
|
| Q |
200 |
actaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcatgtccagcttgaacacttcaaagctggtaagcttaggt |
299 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| ||||||| | ||| | ||||||||||||||| ||||||||| || ||| || ||| |
|
|
| T |
30155988 |
actaacaaaatacaccctatcttccagcttcacattctgccatccaatagaatccttgtccatgtccagcttgaagacttcaaagatgttaatctgaggc |
30155889 |
T |
|
| Q |
300 |
ggcttaacaaatgatg |
315 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30155888 |
ggcttaacaaatgatg |
30155873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 315
Target Start/End: Complemental strand, 30154592 - 30154280
Alignment:
| Q |
3 |
acatcaccatgctttgatgtctcctcagggaagtatttgatgctgctatcattcaaacaaaacatcccaaactctaaacttgtcggtggatttatttttg |
102 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||||||||||||||||| | |||||||||||||||| ||| |||||| | | |||||||| | | |
|
|
| T |
30154592 |
acatcaccatgcttcgatgtctccacaggaaagtatttgatgctgctattagtcaaacaaaacatccccaacactaaacccgaccatggattta---tag |
30154496 |
T |
|
| Q |
103 |
gacatggaaaagtaatggcaaagtagatactgttccctctaa--ct-aactcttcgctgtaattaagttcatcccttgccaataccatgcttttccaatt |
199 |
Q |
| |
|
||||||||||||||| ||||| || || || |||||||||| || ||||||| || |||||||| ||| ||||| || ||||| || || | |
|
|
| T |
30154495 |
gacatggaaaagtaacagcaaaataaatgctattccctctaatcctcaactctttattgcaattaagtacattccttgacataaccatactcttgtagac |
30154396 |
T |
|
| Q |
200 |
actaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcatgtccagcttgaacacttcaaagctggtaagcttaggt |
299 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||| ||||||| | ||| | ||||||||||||| ||||||||| || ||| | ||| |
|
|
| T |
30154395 |
actaacaaaagacactatatcttccagcttcacattctgccatccaatagaatccttgtcagtgtccagcttgaagacttcaaagttgttaatttgaggc |
30154296 |
T |
|
| Q |
300 |
ggcttaacaaatgatg |
315 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30154295 |
ggcttaacaaatgatg |
30154280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 312
Target Start/End: Complemental strand, 8295224 - 8295077
Alignment:
| Q |
165 |
agttcatcccttgccaataccatgcttttccaattactaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcatgt |
264 |
Q |
| |
|
|||||||| |||| || || |||||| || | |||||||||||| | || ||||||||||||||||||||| |||| ||||| || ||| || || |
|
|
| T |
8295224 |
agttcatctcttgacattatcatgctcttatagttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtga |
8295125 |
T |
|
| Q |
265 |
ccagcttgaacacttcaaagctggtaagcttaggtggcttaacaaatg |
312 |
Q |
| |
|
|||| ||||||| |||||||| |||| | ||||||||||||||||| |
|
|
| T |
8295124 |
ccagtttgaacaattcaaagccagtaacccgaggtggcttaacaaatg |
8295077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 16489666 - 16489724
Alignment:
| Q |
279 |
tcaaagctggtaagcttaggtggcttaacaaatgatgagacaacattgaaacggtcaga |
337 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||| || | |||||||||||||||||| |
|
|
| T |
16489666 |
tcaaagcttgtaagcttaggtggcttagcatatgctgggttaacattgaaacggtcaga |
16489724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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