View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12468_high_1 (Length: 416)

Name: NF12468_high_1
Description: NF12468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12468_high_1
NF12468_high_1
[»] chr4 (2 HSPs)
chr4 (25-397)||(41108007-41108379)
chr4 (178-245)||(7600923-7600990)
[»] chr7 (7 HSPs)
chr7 (33-317)||(34913795-34914079)
chr7 (33-317)||(34906246-34906533)
chr7 (31-381)||(35702299-35702636)
chr7 (132-254)||(33032677-33032799)
chr7 (132-254)||(33120237-33120359)
chr7 (132-251)||(1470600-1470719)
chr7 (39-94)||(35725680-35725737)
[»] scaffold0036 (1 HSPs)
scaffold0036 (36-191)||(19702-19857)
[»] chr5 (6 HSPs)
chr5 (132-252)||(10101036-10101156)
chr5 (127-252)||(9678699-9678824)
chr5 (132-252)||(10104839-10104959)
chr5 (132-252)||(10214390-10214510)
chr5 (178-251)||(21036232-21036305)
chr5 (178-251)||(20982827-20982899)
[»] chr6 (2 HSPs)
chr6 (178-248)||(26384421-26384491)
chr6 (200-259)||(22366684-22366743)
[»] chr3 (1 HSPs)
chr3 (191-251)||(5130615-5130675)
[»] chr8 (2 HSPs)
chr8 (191-251)||(1086910-1086970)
chr8 (165-249)||(7224365-7224449)
[»] scaffold0011 (1 HSPs)
scaffold0011 (53-107)||(17017-17071)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 25 - 397
Target Start/End: Original strand, 41108007 - 41108379
Alignment:
25 gttgtggagtctgtaagagcaccatgcgaccaccccagacagcatgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatc 124  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41108007 gttgttgagtctgtaagagcaccatgcgaccaccccagacagcgtgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatc 41108106  T
125 tcagccattaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctata 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41108107 tcagccattaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctata 41108206  T
225 gaacagatcctgttcaagtaaggtcgtgactattgctccacgcgtgtgttatataaacacttgagttcttctagtttcaaacgatgtgggactaaaagct 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41108207 gaacagatcctgttcaagtaaggtcgtgactattgctccacgcgtgtgttatataaacacttgagttcttctagtttcaaacgatgtgggactaaaagct 41108306  T
325 tttttctgttgtatacttgcttataaaaaatgcttttgactcttgaaagttccagctttataacaaagttagt 397  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41108307 tctttctgttgtatacttgcttataaaaaatgcttttgactcttgaaagttccagctttataacaaagttagt 41108379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 7600990 - 7600923
Alignment:
178 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaa 245  Q
    ||||| ||| ||| ||||||||||||||||| | |||| | ||||||||||| ||||||| |||||||    
7600990 tgttcatgtttccctagaaatcaaggacacaattgtacaagcctatagaacaaatcctgtccaagtaa 7600923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 33 - 317
Target Start/End: Original strand, 34913795 - 34914079
Alignment:
33 gtctgtaagagcaccatgcgaccaccccagacagcatgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagccat 132  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |    
34913795 gtctgtaagagcaccgtgcaaccaccccagacaacatgtgtctgagaacgatcatctacagcacaagatgatgtctcaacatgagaatcatctaagccgt 34913894  T
133 taatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagat 232  Q
    ||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34913895 taatcacgctctgatcgcacggtcttcattcatcatccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagat 34913994  T
233 cctgttcaagtaaggtcgtgactattgctccacgcgtgtgttatataaacacttgagttcttctagtttcaaacgatgtgggact 317  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| | | ||| ||| ||| |||||||||||    
34913995 cctgttcaagtaaggtcgtgacaattgttccacgtgtgtgttatataaacacttgagctgtgctaattttaaatgatgtgggact 34914079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 33 - 317
Target Start/End: Complemental strand, 34906533 - 34906246
Alignment:
33 gtctgtaagagcaccatgcgaccaccccagaca---gcatgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagc 129  Q
    ||||||||||||||| ||| |||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
34906533 gtctgtaagagcaccgtgcaaccaccccagacacatgcatgtgtctgagaacgatcatctacagcacaagatgatgtctcaacatgagaatcatctaagc 34906434  T
130 cattaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaaca 229  Q
    | |||||||||||||||||||| ||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34906433 cgttaatcacgctctgatcgcacggtcttcattcatcatccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaaca 34906334  T
230 gatcctgttcaagtaaggtcgtgactattgctccacgcgtgtgttatataaacacttgagttcttctagtttcaaacgatgtgggact 317  Q
    ||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| | | ||| ||| ||| |||||||||||    
34906333 gatcctgttcaagtaaggtcgtgacaattgttccacgtgtgtgttatataaacacttgagctgtgctaattttaaatgatgtgggact 34906246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 31 - 381
Target Start/End: Complemental strand, 35702636 - 35702299
Alignment:
31 gagtctgtaagagcaccatgcgaccaccccagacagcatgtgtctgagaacgatcatctacagcacaagattatg---tctcaacatgagaa---tcatc 124  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||   ||||||||||||||   |||||    
35702636 gagtctgtaagaacaccatgcaaccaccccagacagcgtgtgtctgagaacgatcatctacagcacaagatgatgatgtctcaacatgagaagaatcatc 35702537  T
125 tcagccattaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctata 224  Q
    |||||| |||||||||||||||||||| |||  |  ||||||||||     |||              || |||||  ||||||||||||| ||||||||    
35702536 tcagccgttaatcacgctctgatcgcacggttgtctttcatcatcc-----tat--------------aggaatcatagacacagtagtaccatcctata 35702456  T
225 gaacagatcctgttcaagtaaggtcgtgactattgctccacgcgtgtgttatataaacacttgagttcttctagtttcaaacgatgtgggactaaaagct 324  Q
    |||||||||||||||||||||||||||||| | || | |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||     
35702455 gaacagatcctgttcaagtaaggtcgtgaccaatgattcacgcgtgtgctatataaacatttgagttctgctagtttcaaacgatgtgggactaaaagcc 35702356  T
325 tttttctgttgt-atacttgcttataaaaaatgcttttgactcttgaaagttccagct 381  Q
    | |||||||||| ||||||| |||| ||||| |||| |||||||||||| || |||||    
35702355 tgtttctgttgtaatacttggttat-aaaaacgcttctgactcttgaaaattgcagct 35702299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 33032677 - 33032799
Alignment:
132 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 231  Q
    ||||||||||||||||| || ||||     || |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33032677 ttaatcacgctctgatcacacggtcacaaatcctcatccagatttatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 33032776  T
232 tcctgttcaagtaaggtcgtgac 254  Q
    |||||||||||||||||||||||    
33032777 tcctgttcaagtaaggtcgtgac 33032799  T

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Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 33120237 - 33120359
Alignment:
132 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 231  Q
    ||||||||||||||||| || ||||     || |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33120237 ttaatcacgctctgatcacacggtcacaaatcctcatccagatttatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 33120336  T
232 tcctgttcaagtaaggtcgtgac 254  Q
    |||||||||||||||||||||||    
33120337 tcctgttcaagtaaggtcgtgac 33120359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 1470600 - 1470719
Alignment:
132 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 231  Q
    ||||||| ||||||||| || |||| | |||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
1470600 ttaatcatgctctgatcacacggtcatggttcatccaccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaataga 1470699  T
232 tcctgttcaagtaaggtcgt 251  Q
    || |||||||||||||||||    
1470700 tcatgttcaagtaaggtcgt 1470719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 35725737 - 35725680
Alignment:
39 aagagcaccatgcgaccaccccagacagcatgtgt--ctgagaacgatcatctacagc 94  Q
    |||| |||| ||| ||||||||||||||| |||||  |||||||||||||||||||||    
35725737 aagaacaccgtgcaaccaccccagacagcgtgtgtgtctgagaacgatcatctacagc 35725680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 19857 - 19702
Alignment:
36 tgtaagagcaccatgcgaccaccccagacagcatgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagccattaa 135  Q
    |||||||||||| |||| |||||||||| ||| | |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||    
19857 tgtaagagcaccgtgcggccaccccagatagcgtttgtctgagaacgattatctacagcacaagatgatgtcttaacatgagaatcatctcagccgttaa 19758  T
136 tcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctcct 191  Q
    ||||||||||||| || |||||| |||||||||| |||||||||||||||||||||    
19757 tcacgctctgatctcacggtcttcgttcatcatctagacatatgttcctgtctcct 19702  T

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Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 10101036 - 10101156
Alignment:
132 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 231  Q
    ||||||||||||||||| || |||| | |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10101036 ttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 10101135  T
232 tcctgttcaagtaaggtcgtg 252  Q
    |||||||||||||||||||||    
10101136 tcctgttcaagtaaggtcgtg 10101156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 127 - 252
Target Start/End: Complemental strand, 9678824 - 9678699
Alignment:
127 agccattaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctataga 226  Q
    |||| ||||||||||||||||| ||  ||| |  ||||||  |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
9678824 agccgttaatcacgctctgatcacacagtcatgattcatccaccagacgtatgttcctgtctcctttgaaatcaaggacacagtagtacgatcctataga 9678725  T
227 acagatcctgttcaagtaaggtcgtg 252  Q
    ||||||||||||||||||||||||||    
9678724 acagatcctgttcaagtaaggtcgtg 9678699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 10104839 - 10104959
Alignment:
132 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 231  Q
    ||||||||||||||||| || |||| | |||||||  |||||| |||| |||||||| |||||||||||||||||||||||||  |||||||||||||||    
10104839 ttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgctcctgtcttcttagaaatcaaggacacagtagtataatcctatagaacaga 10104938  T
232 tcctgttcaagtaaggtcgtg 252  Q
    |||||||||||||||||||||    
10104939 tcctgttcaagtaaggtcgtg 10104959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 10214510 - 10214390
Alignment:
132 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 231  Q
    ||||||||||||||||| || ||||     |||||  |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
10214510 ttaatcacgctctgatcacacggtcacaactcatctaccagacatatgttcctatctccttagaaatcaaggacacagtagtacaatcctatagaacaga 10214411  T
232 tcctgttcaagtaaggtcgtg 252  Q
    |||||||||||||||||||||    
10214410 tcctgttcaagtaaggtcgtg 10214390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 21036232 - 21036305
Alignment:
178 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 251  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21036232 tgtttctgtttccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 21036305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 20982827 - 20982899
Alignment:
178 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 251  Q
    ||||| || |||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||||    
20982827 tgttcgtgcctccttagaaatcaaggatacaatagtacgatcctatagatcagatcctgttc-agtaaggtcgt 20982899  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 26384491 - 26384421
Alignment:
178 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggt 248  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26384491 tgtttctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggt 26384421  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 22366743 - 22366684
Alignment:
200 aaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgactattg 259  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
22366743 aaggacacagtagtacgatcctatagaacagatcctgttcaaataaggtcgtgactattg 22366684  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 5130675 - 5130615
Alignment:
191 ttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 251  Q
    ||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||    
5130675 ttagaaatcaaggacacagtaatacgatcctataaaagagatcttgttcaagtaaggtcgt 5130615  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 1086910 - 1086970
Alignment:
191 ttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 251  Q
    |||||||||||||||||| |||||||||| |||| || ||||| |||||||||||||||||    
1086910 ttagaaatcaaggacacaatagtacgatcttataaaatagatcttgttcaagtaaggtcgt 1086970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 7224449 - 7224365
Alignment:
165 tcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtc 249  Q
    |||||||||  ||||||| |||||||||||||||||||||| || |  ||||||||||||||||| ||| | || ||||||||||    
7224449 tcatccagatttatgttcatgtctccttagaaatcaaggacgcaatgttacgatcctatagaacaaatcatatttaagtaaggtc 7224365  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 17071 - 17017
Alignment:
53 accaccccagacagcatgtgtctgagaacgatcatctacagcacaagattatgtc 107  Q
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17071 accacccccgacagtatgtgtctgagaacgatcatccacagtacaagatgatgtc 17017  T

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