View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12468_high_4 (Length: 327)

Name: NF12468_high_4
Description: NF12468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12468_high_4
NF12468_high_4
[»] chr4 (3 HSPs)
chr4 (19-309)||(27005355-27005645)
chr4 (26-255)||(26990930-26991157)
chr4 (83-262)||(26976628-26976802)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 27005355 - 27005645
Alignment:
Q  19 gctctagtaccacttgttggagagcccccaaaacacagggagcaacaactagttaataatcaggaacaacaaaagactgaaacaccacatttccaccaaa 118  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27005355 gctctggtaccacttgttggagagcccccgaaacacagggagcaacaacaagttaataatcaggaacaacaaaagactgaaacaccacatttccaccaaa 27005454  T
Q  119 aaccttagagcattacccatatgaatcatctctcttctatatcattagtttagcccattctcaactagtgtgagactaaccactcacatttgaatacaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27005455 aaccttagagcattacccatatgaatcatctctcttctatatcattagtttagcccattctcaactagtgtgagactaaccactcacatttgaatacaag 27005554  T
Q  219 ctaccagttcacaaatgcatattcatcaatattttctttccaattaaaaaaggggcatnnnnnnncaaacctgcttagcaagggcagtagc 309  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||    
T  27005555 ctacccgttcacaaatgcatattcatcaatattttctttccaattaaaaaaggggcctaaaaaaacaaacctgcttagcaagggcagtagc 27005645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 26 - 255
Target Start/End: Original strand, 26990930 - 26991157
Alignment:
Q  26 taccacttgttggagagcccccaaaacacagggagcaacaactagttaat-aatcaggaacaacaaaagactgaaacaccacatttccaccaaaaacctt 124  Q
    |||| |||||| ||||| |||||||||| ||||||||||||  || |||  ||||| |||| ||||| |||  |||||| ||||||||||| |||||||     
T  26990930 taccgcttgttagagagtccccaaaacatagggagcaacaataaggtaaccaatcatgaactacaaa-gaccaaaacactacatttccacccaaaaccta 26991028  T
Q  125 agagcattacccatatgaatcatctctcttctatatcattagtttagcccattctcaactagtgtgagactaaccactcacatttgaatacaagctacca 224  Q
    ||| ||||| |||||||||| |||| | ||||||||||||||||| || ||| ||||||  ||||||||||||||||||||||||||||||||| ||||     
T  26991029 agatcattagccatatgaattatctttattctatatcattagtttggctcatcctcaaccggtgtgagactaaccactcacatttgaatacaagataccc 26991128  T
Q  225 gttcacaaatgcatattcatcaatattttct 255  Q
     ||||||||  || ||||||||| |||||||    
T  26991129 attcacaaa--cacattcatcaaaattttct 26991157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 262
Target Start/End: Complemental strand, 26976802 - 26976628
Alignment:
Q  83 aacaacaaaagactgaaacaccacatttccaccaaaaaccttagagcattacccatatgaatcatctctcttctatatcattagtttagcccattctcaa 182  Q
    |||| ||||||||| |||||||||||||||||     |||||||| |||||  ||||||| ||  |||||||||||||||||| |||||| |||| |||     
T  26976802 aacagcaaaagactaaaacaccacatttccac-----accttagaacattagacatatgagtcgcctctcttctatatcattaatttagctcattatcag 26976708  T
Q  183 ctagtgtgagactaaccactcacatttgaatacaagctaccagttcacaaatgcatattcatcaatattttctttccaat 262  Q
    | | |||| |||||| |||||| | |||||| | | ||| ||||| ||||||  ||||||||||||||||||| ||||||    
T  26976707 ccaatgtgggactaaacactcaaagttgaatgccaactatcagtttacaaatagatattcatcaatattttctatccaat 26976628  T

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