View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12468_low_1 (Length: 549)
Name: NF12468_low_1
Description: NF12468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12468_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 16299241 - 16298712
Alignment:
| Q |
1 |
ctgtgtttgccaaagagttggttaaatctattagggagtatctagataaactgtacttttggtataagaaagcccatgaccagactgtcaacaatgcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16299241 |
ctgtgtttgccaaagagttggttaaatctattagggagaatctagataaattgtacttttggtataagaaagctcatgaccagactgtcaacaatgcaca |
16299142 |
T |
|
| Q |
101 |
accacttgctagtggcagagaaacaattacccatgttgaaaccaatacagctgttgccgcccgccgcccttcgggtatggcaagggccaatgctttcgac |
200 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
16299141 |
accacttgcgagttgtagagaaacaattacccatgttgaaaccaatacagctgttgctgcccgccgcccttcgggtatggcaagggccaatgcttttgac |
16299042 |
T |
|
| Q |
201 |
caacatttggaggagcaaaactcaattgacctacgaaatgagcttgatgggtatattaaaagcaagtgtgtcaagcggactgataattttgacattcttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
16299041 |
caacatttggaggagcaaaactcaattgacctacagaatgagcttgatgggtatattaacagcaagtgtgtcaagcgaactgataattttgacattcttg |
16298942 |
T |
|
| Q |
301 |
tgtgctggaaaaataattcaagtcaataccccattttatctaccatggcaaaagatattttggccataccggtgtctacagttgcttcagaaagtgcttt |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16298941 |
tgtggtggaaaaataattcaagtcaataccccattttatctaccatggcaaaggatattttggccataccggtgtctacagttgcttcagaaagtgcttt |
16298842 |
T |
|
| Q |
401 |
cagcaca-aggggagagtcatagaaacctacaggacctctctaaaggaagaaatggcagaggcattaatctgtacccaaaattggttgaaaccgtcgttc |
499 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16298841 |
cagcacaggggggagagtcatagaaacctacaggacctctctaaaggaagaaatggcagaggcattaatctgtacccaaaattggttgaaaccgtcgttc |
16298742 |
T |
|
| Q |
500 |
acttactttaaagacttgcaacttatggag |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
16298741 |
acttactttaaagacttgcaacttatggag |
16298712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 22896738 - 22896208
Alignment:
| Q |
1 |
ctgtgtttgccaaagagttggttaaatctattagggagtatctagataaactgtacttttggtataagaaagcccatgaccagactgtcaacaatgcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
22896738 |
ctgtgtttgccaaagagttggttaaatctattagggagaatctagataaattgtacttttggtataagaaagcccatgacccgactatcaacaatgcaca |
22896639 |
T |
|
| Q |
101 |
accacttgctagtggcagagaaacaattacccatgttgaaaccaatacagctgttgccgcccgccgcccttcgggtatggcaagggccaatgctttcgac |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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|
| T |
22896638 |
accacttgctagtggtagagaaacaattacccatgttgaaaccaatacaactgttgccgcccgccgcccttcggatatggcaagggccaatgcttttgac |
22896539 |
T |
|
| Q |
201 |
caacatttggaggagcaaaactcaattgacctacgaaatgagcttgatgggtatattaaaagcaagtgtgtcaagcggactgataattttgacattcttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
22896538 |
caacatttggaggagcaaaactcaattgacctacagaatgagcttgatgggtatattaacagcaagtgtgtcaagcgtactgataattttgacattcttg |
22896439 |
T |
|
| Q |
301 |
tgtgctggaaaaataattcaagtcaataccccattttatctaccatggcaaaagatattttggccataccggtgtctacagttgcttcagaaagtgcttt |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
22896438 |
tgtggtggaaaaataattcaagtcaataccccattttatctaccatggcaaaggatattttggccataccgttgtctacagttgcttcagaaagtgcttt |
22896339 |
T |
|
| Q |
401 |
cagcaca--aggggagagtcatagaaacctacaggacctctctaaaggaagaaatggcagaggcattaatctgtacccaaaattggttgaaaccgtcgtt |
498 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22896338 |
cagcacagggggggagagtcatagaaacctacaggacctctctaaaggaagaaatggcagaggcattaatctgtacccaaaattggttgaaaccgtcgtt |
22896239 |
T |
|
| Q |
499 |
cacttactttaaagacttgcaacttatggag |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
22896238 |
cacttactttaaagacttgcaacttatggag |
22896208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 15977476 - 15976952
Alignment:
| Q |
1 |
ctgtgtttgccaaagagttggttaaatctattagggagtatctagataaactgtacttttggtataagaaagcccatgaccagactgtcaacaatgcaca |
100 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||| | || | ||||| || | |||||||| ||| |||||||||| | ||||||| ||| ||| |
|
|
| T |
15977476 |
ctgtgtttgccaaagaattgcttggtactattagggagagtataaaaaaactttattgttggtatagaaaaacccatgaccaaattgtcaactatggaca |
15977377 |
T |
|
| Q |
101 |
accacttgctagtggcagagaaacaattacccatgttgaaaccaatacagctgttgccgcccgccgcccttcgggtatggcaagggccaatgctttcgac |
200 |
Q |
| |
|
||||||||||||||| |||||| || |||| | |||||||||| ||||| || || |||| |||| |||||||||||||||||| ||| || |
|
|
| T |
15977376 |
accacttgctagtggtggagaaaatgtttcccacgatgaaaccaatgcagcttatgttgctcgcc---cttcacgtatggcaagggccaatgattttcac |
15977280 |
T |
|
| Q |
201 |
caacatttggaggagcaaaactcaattgacctacgaaatgagcttgatgggtatattaaaagcaagtgtgtcaagcggactgataattttgacattcttg |
300 |
Q |
| |
|
|||||||| || |||||||||||||| | ||| ||||||||||||||||||||||| ||||| ||| | | ||| | ||| |||||||||||||||| |
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|
| T |
15977279 |
caacatttatagtagcaaaactcaatttatttacataatgagcttgatgggtatattaatagcaattgtattacgcgtattgaaaattttgacattcttg |
15977180 |
T |
|
| Q |
301 |
tgtgctggaaaaataattcaagtcaataccccattttatctaccatggcaaaagatattttggccataccggtgtctacagttgcttcagaaagtgcttt |
400 |
Q |
| |
|
|||| || |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
15977179 |
tgtgaggggaaaatagttcaagtcaataccccattttatcta-aatggcaaaagatattttggccataccagtgtctactgttgcttcagaaagtgcttt |
15977081 |
T |
|
| Q |
401 |
cagcacaaggggagagtcatagaaacctacaggacctctctaaaggaagaaatggcagaggcattaatctgtacccaaaattggttgaaaccgtcgttca |
500 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || | | |||| |||||||| | | | |||||||||| | |||||| |||||| |||||||| |
|
|
| T |
15977080 |
cagcacaaggggagagttatagaaacctacaagagcacaataaaagaagaaattttacatgaattaatctgttcgaaaaatttgttgaacttgtcgttca |
15976981 |
T |
|
| Q |
501 |
cttactttaaagacttgcaacttatggag |
529 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
15976980 |
cttactttaaaaacttgcaacttatggag |
15976952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 59 - 529
Target Start/End: Original strand, 14428093 - 14428563
Alignment:
| Q |
59 |
ttggtataagaaagcccatgaccagactgtcaacaatgcacaaccacttgctagtggcagagaaacaattacccatgttgaaaccaatacagctgttgcc |
158 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||| ||||||||||| || | | |||||| ||||||||||||||||||||| ||||| ||| |
|
|
| T |
14428093 |
ttggtataagaaaacccatgaccaaactgtcaacaatggacaaccacttgttattcgtggagaaaatgttacccatgttgaaaccaataaagctgctgct |
14428192 |
T |
|
| Q |
159 |
gcccgccgcccttcgggtatggcaagggccaatgctttcgaccaacatttggaggagcaaaactcaattgacctacgaaatgagcttgatgggtatatta |
258 |
Q |
| |
|
|| | |||| |||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
14428193 |
gcaagtcgccattcgcgtatggcaagggccaattctttttaccaatatttggaggagcaaaactcaattgacctacaaaacgagcttgatgggtatatta |
14428292 |
T |
|
| Q |
259 |
aaagcaagtgtgtcaagcggactgataattttgacattcttgtgtgctggaaaaataattcaagtcaataccccattttatctaccatggcaaaagatat |
358 |
Q |
| |
|
| | ||| | ||||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||||| |||||| |||||| ||||| ||||||||| |
|
|
| T |
14428293 |
acaacaattatgtcaagcgtactgaaaattttgacattcttgtgtggtggaaaaatagttcaagtcaatatcccattatatctatcatggaaaaagatat |
14428392 |
T |
|
| Q |
359 |
tttggccataccggtgtctacagttgcttcagaaagtgctttcagcacaaggggagagtcatagaaacctacaggacctctctaaaggaagaaatggcag |
458 |
Q |
| |
|
|||| ||||| |||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14428393 |
tttgaccatatcggtgtctactgtttctttagaaagtgctttcagcacagggggagagtcatagaaacctacaggagctctctaaaggaagaaatggcag |
14428492 |
T |
|
| Q |
459 |
aggcattaatctgtacccaaaattggttgaaaccgtcgttcacttactttaaagacttgcaacttatggag |
529 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
14428493 |
aggcattaatatgttcccaaaattggttgaaactatcgttcacttgctttaacgacttgaaacttatggag |
14428563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 492
Target Start/End: Complemental strand, 17859842 - 17859800
Alignment:
| Q |
450 |
aaatggcagaggcattaatctgtacccaaaattggttgaaacc |
492 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
17859842 |
aaatggcagaggcattgatctgtgcacaaaattggttgaaacc |
17859800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 34915970 - 34916012
Alignment:
| Q |
450 |
aaatggcagaggcattaatctgtacccaaaattggttgaaacc |
492 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
34915970 |
aaatggcagaggcattgatctgtgcacaaaattggttgaaacc |
34916012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 492
Target Start/End: Complemental strand, 4968373 - 4968331
Alignment:
| Q |
450 |
aaatggcagaggcattaatctgtacccaaaattggttgaaacc |
492 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
4968373 |
aaatggcagaggcattgatctgtgcacaaaattggttgaaacc |
4968331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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